当前解析结果
SmilChr07G000999| 统一新 Gene ID | SmilChr07G000999 |
|---|---|
| 名称 | SmilChr07G000999 |
| 描述 | uncharacterized SmilChr07G000999 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 7265625 - 7271014 / + |
| NCBI Gene ID | LOC130992108 |
|---|---|
| GeneID | 130992108 |
| locus_tag | - |
| NCBI Name | LOC130992108 |
| 原始查询 | LOC130992108 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821511]; symbol=AT3G19740; hit=AT3G19740; species=arabidopsis; confidence=high |
| 产物 | P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821511]; symbol=AT3G19740; hit=AT3G19740; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G19740 (AT3G19740)P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821511] identity=50.2; qcov=0.954; evalue=0; confidence=high |
| Rice | Os06g0225900- identity=62.5; qcov=0.402; evalue=3.55e-158; confidence=low |
| GO | GO:0005524 (ATP binding); GO:0005741 (mitochondrial outer membrane); GO:0016887 (ATP hydrolysis activity) |
| KEGG | - |
| Pfam | PF00004 (AAA); PF17862 (AAA_lid_3); PF24933 (DUF7751) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992108 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057772591.1 |
| 2 | Mitochondrion matrix | 线粒体基质 | 0.60000 | XP_057772591.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057772591.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057772591.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057772591.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:7265885 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr7:7265937 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A11 |
Chr7:7265949 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr7:7266415 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr7:7266676 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B34 |
Chr7:7266676 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B34 |
Chr7:7267342 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr7:7268276 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B106,B11,B85,C50,D2 |
Chr7:7268335 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B53,C62 |
Chr7:7268850 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr7:7269009 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A4,B72,C60,D7 |
Chr7:7269112 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,B139,C73 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772591.1PF24933
DUF7751 507-564 aa
PF00004
AAA 644-773 aa
PF17862
AAA_lid_3 795-831 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772591.1 |
Pfam | PF24933 |
DUF7751 | Domain | 507 | 564 | 6.6e-12 | 46.4 | Domain of unknown function (DUF7751) |
XP_057772591.1 |
Pfam | PF00004 |
AAA | Domain | 644 | 773 | 7.2e-37 | 127.5 | ATPase family associated with various cellular activities (AAA) |
XP_057772591.1 |
Pfam | PF17862 |
AAA_lid_3 | Domain | 795 | 831 | 7.2e-11 | 42.1 | AAA+ lid domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。