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TF 结合位点 TF 靶基因 EMS 突变
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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G000932

染色体: Chr07 坐标: 6649581-6652628 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G000932
名称SmilChr07G000932
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向6649581 - 6652628 / -

ID 对照

NCBI Gene IDLOC130992123
GeneID130992123
locus_tag-
NCBI NameLOC130992123
原始查询LOC130992123

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
产物putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial
ArabidopsisAT1G12700 (RPF1)
RNA processing FACTOR [Source:NCBI gene (formerly Entrezgene);Acc:837825]
identity=37.7; qcov=0.865; evalue=1.93e-129; confidence=medium
RiceOs08g0107800
-
identity=30.2; qcov=0.953; evalue=1.36e-78; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long)
InterPro-
eggNOG-
NRGeneID:130992123

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057772616.1
2 Chloroplast 叶绿体 0.40000 XP_057772616.1
3 Nucleus 细胞核 0.00000 XP_057772616.1
4 Chromosome 染色体 0.00000 XP_057772616.1
5 Centromere 着丝粒 0.00000 XP_057772616.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:6650658 G A EMS_canonical_SNV CDS_variant 3 B129,C23,D10
Chr7:6650724 G A EMS_canonical_SNV CDS_variant 3 B95,C45,C53
Chr7:6650742 C T EMS_canonical_SNV CDS_variant 3 B95,C45,C53
Chr7:6650761 G A EMS_canonical_SNV CDS_variant 2 B48,C61
Chr7:6650843 C T EMS_canonical_SNV CDS_variant 2 B102,B140
Chr7:6650879 G A EMS_canonical_SNV CDS_variant 3 B129,C23,D10
Chr7:6650889 G A EMS_canonical_SNV CDS_variant 3 B114,B129,C23
Chr7:6650899 C T EMS_canonical_SNV CDS_variant 1 B140
Chr7:6650988 ATT A 2bp_deletion frameshift_variant 13 A14,B125,B140,B49,B70,B79,B80,B83,C17,C36,C4,C66,D4
Chr7:6651014 C T EMS_canonical_SNV CDS_variant 3 B125,B140,B80
Chr7:6651043 C T EMS_canonical_SNV CDS_variant 3 B125,B140,B80
Chr7:6651070 G A EMS_canonical_SNV CDS_variant 3 B125,B140,B80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772616.1
598 aa
N
1
299
598
PPR_2
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_1
PPR_3
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
C
PF13041 PPR_2 95-143 aa PF12854 PPR_1 162-194 aa PF13041 PPR_2 165-211 aa PF01535 PPR 168-193 aa PF13812 PPR_3 194-242 aa PF12854 PPR_1 195-223 aa PF13041 PPR_2 198-245 aa PF01535 PPR 200-226 aa PF17177 PPR_long 210-331 aa PF12854 PPR_1 230-258 aa PF13041 PPR_2 232-281 aa PF01535 PPR 237-258 aa PF13812 PPR_3 256-315 aa PF12854 PPR_1 265-296 aa PF13041 PPR_2 267-316 aa PF01535 PPR 270-298 aa PF13812 PPR_3 292-331 aa PF12854 PPR_1 300-331 aa PF01535 PPR 305-331 aa PF12854 PPR_1 330-358 aa PF13812 PPR_3 330-379 aa PF13041 PPR_2 332-381 aa PF01535 PPR 335-365 aa PF12854 PPR_1 364-393 aa PF13041 PPR_2 367-415 aa PF01535 PPR 370-399 aa PF13812 PPR_3 391-432 aa PF12854 PPR_1 399-431 aa PF01535 PPR 405-432 aa PF13041 PPR_2 435-471 aa PF13812 PPR_3 444-468 aa PF12854 PPR_1 454-485 aa PF13041 PPR_2 458-507 aa PF01535 PPR 461-491 aa PF13812 PPR_3 482-537 aa PF12854 PPR_1 489-522 aa PF13041 PPR_2 493-542 aa PF01535 PPR 496-525 aa PF12854 PPR_1 524-556 aa PF13041 PPR_2 528-567 aa PF01535 PPR 531-561 aa
XP_057772617.1
598 aa
N
1
299
598
PPR_2
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_1
PPR_3
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
C
PF13041 PPR_2 95-143 aa PF12854 PPR_1 162-194 aa PF13041 PPR_2 165-211 aa PF01535 PPR 168-193 aa PF13812 PPR_3 194-242 aa PF12854 PPR_1 195-223 aa PF13041 PPR_2 198-245 aa PF01535 PPR 200-226 aa PF17177 PPR_long 210-331 aa PF12854 PPR_1 230-258 aa PF13041 PPR_2 232-281 aa PF01535 PPR 237-258 aa PF13812 PPR_3 256-315 aa PF12854 PPR_1 265-296 aa PF13041 PPR_2 267-316 aa PF01535 PPR 270-298 aa PF13812 PPR_3 292-331 aa PF12854 PPR_1 300-331 aa PF01535 PPR 305-331 aa PF12854 PPR_1 330-358 aa PF13812 PPR_3 330-379 aa PF13041 PPR_2 332-381 aa PF01535 PPR 335-365 aa PF12854 PPR_1 364-393 aa PF13041 PPR_2 367-415 aa PF01535 PPR 370-399 aa PF13812 PPR_3 391-432 aa PF12854 PPR_1 399-431 aa PF01535 PPR 405-432 aa PF13041 PPR_2 435-471 aa PF13812 PPR_3 444-468 aa PF12854 PPR_1 454-485 aa PF13041 PPR_2 458-507 aa PF01535 PPR 461-491 aa PF13812 PPR_3 482-537 aa PF12854 PPR_1 489-522 aa PF13041 PPR_2 493-542 aa PF01535 PPR 496-525 aa PF12854 PPR_1 524-556 aa PF13041 PPR_2 528-567 aa PF01535 PPR 531-561 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057772616.1 Pfam PF13041 PPR_2 Repeat 95 143 4.7e-145 472.4 PPR repeat family
XP_057772616.1 Pfam PF12854 PPR_1 Repeat 162 194 8.2e-114 371.7 PPR repeat
XP_057772616.1 Pfam PF13041 PPR_2 Repeat 165 211 4.7e-145 472.4 PPR repeat family
XP_057772616.1 Pfam PF01535 PPR Repeat 168 193 2.9e-86 278.6 PPR repeat
XP_057772616.1 Pfam PF13812 PPR_3 Repeat 194 242 5.9e-55 183.9 Pentatricopeptide repeat domain
XP_057772616.1 Pfam PF12854 PPR_1 Repeat 195 223 8.2e-114 371.7 PPR repeat
XP_057772616.1 Pfam PF13041 PPR_2 Repeat 198 245 4.7e-145 472.4 PPR repeat family
XP_057772616.1 Pfam PF01535 PPR Repeat 200 226 2.9e-86 278.6 PPR repeat
XP_057772616.1 Pfam PF17177 PPR_long Repeat 210 331 2.9e-25 89.6 Pentacotripeptide-repeat region of PRORP
XP_057772616.1 Pfam PF12854 PPR_1 Repeat 230 258 8.2e-114 371.7 PPR repeat
XP_057772616.1 Pfam PF13041 PPR_2 Repeat 232 281 4.7e-145 472.4 PPR repeat family
XP_057772616.1 Pfam PF01535 PPR Repeat 237 258 2.9e-86 278.6 PPR repeat
XP_057772616.1 Pfam PF13812 PPR_3 Repeat 256 315 5.9e-55 183.9 Pentatricopeptide repeat domain
XP_057772616.1 Pfam PF12854 PPR_1 Repeat 265 296 8.2e-114 371.7 PPR repeat
XP_057772616.1 Pfam PF13041 PPR_2 Repeat 267 316 4.7e-145 472.4 PPR repeat family
XP_057772616.1 Pfam PF01535 PPR Repeat 270 298 2.9e-86 278.6 PPR repeat
XP_057772616.1 Pfam PF13812 PPR_3 Repeat 292 331 5.9e-55 183.9 Pentatricopeptide repeat domain
XP_057772616.1 Pfam PF12854 PPR_1 Repeat 300 331 8.2e-114 371.7 PPR repeat
XP_057772616.1 Pfam PF01535 PPR Repeat 305 331 2.9e-86 278.6 PPR repeat
XP_057772616.1 Pfam PF12854 PPR_1 Repeat 330 358 8.2e-114 371.7 PPR repeat
XP_057772616.1 Pfam PF13812 PPR_3 Repeat 330 379 5.9e-55 183.9 Pentatricopeptide repeat domain
XP_057772616.1 Pfam PF13041 PPR_2 Repeat 332 381 4.7e-145 472.4 PPR repeat family
XP_057772616.1 Pfam PF01535 PPR Repeat 335 365 2.9e-86 278.6 PPR repeat
XP_057772616.1 Pfam PF12854 PPR_1 Repeat 364 393 8.2e-114 371.7 PPR repeat
XP_057772616.1 Pfam PF13041 PPR_2 Repeat 367 415 4.7e-145 472.4 PPR repeat family
XP_057772616.1 Pfam PF01535 PPR Repeat 370 399 2.9e-86 278.6 PPR repeat
XP_057772616.1 Pfam PF13812 PPR_3 Repeat 391 432 5.9e-55 183.9 Pentatricopeptide repeat domain
XP_057772616.1 Pfam PF12854 PPR_1 Repeat 399 431 8.2e-114 371.7 PPR repeat
XP_057772616.1 Pfam PF01535 PPR Repeat 405 432 2.9e-86 278.6 PPR repeat
XP_057772616.1 Pfam PF13041 PPR_2 Repeat 435 471 4.7e-145 472.4 PPR repeat family
XP_057772616.1 Pfam PF13812 PPR_3 Repeat 444 468 5.9e-55 183.9 Pentatricopeptide repeat domain
XP_057772616.1 Pfam PF12854 PPR_1 Repeat 454 485 8.2e-114 371.7 PPR repeat
XP_057772616.1 Pfam PF13041 PPR_2 Repeat 458 507 4.7e-145 472.4 PPR repeat family
XP_057772616.1 Pfam PF01535 PPR Repeat 461 491 2.9e-86 278.6 PPR repeat
XP_057772616.1 Pfam PF13812 PPR_3 Repeat 482 537 5.9e-55 183.9 Pentatricopeptide repeat domain
XP_057772616.1 Pfam PF12854 PPR_1 Repeat 489 522 8.2e-114 371.7 PPR repeat
XP_057772616.1 Pfam PF13041 PPR_2 Repeat 493 542 4.7e-145 472.4 PPR repeat family
XP_057772616.1 Pfam PF01535 PPR Repeat 496 525 2.9e-86 278.6 PPR repeat
XP_057772616.1 Pfam PF12854 PPR_1 Repeat 524 556 8.2e-114 371.7 PPR repeat
XP_057772616.1 Pfam PF13041 PPR_2 Repeat 528 567 4.7e-145 472.4 PPR repeat family
XP_057772616.1 Pfam PF01535 PPR Repeat 531 561 2.9e-86 278.6 PPR repeat
XP_057772617.1 Pfam PF13041 PPR_2 Repeat 95 143 4.7e-145 472.4 PPR repeat family
XP_057772617.1 Pfam PF12854 PPR_1 Repeat 162 194 8.2e-114 371.7 PPR repeat
XP_057772617.1 Pfam PF13041 PPR_2 Repeat 165 211 4.7e-145 472.4 PPR repeat family
XP_057772617.1 Pfam PF01535 PPR Repeat 168 193 2.9e-86 278.6 PPR repeat
XP_057772617.1 Pfam PF13812 PPR_3 Repeat 194 242 5.9e-55 183.9 Pentatricopeptide repeat domain
XP_057772617.1 Pfam PF12854 PPR_1 Repeat 195 223 8.2e-114 371.7 PPR repeat
XP_057772617.1 Pfam PF13041 PPR_2 Repeat 198 245 4.7e-145 472.4 PPR repeat family
XP_057772617.1 Pfam PF01535 PPR Repeat 200 226 2.9e-86 278.6 PPR repeat
XP_057772617.1 Pfam PF17177 PPR_long Repeat 210 331 2.9e-25 89.6 Pentacotripeptide-repeat region of PRORP
XP_057772617.1 Pfam PF12854 PPR_1 Repeat 230 258 8.2e-114 371.7 PPR repeat
XP_057772617.1 Pfam PF13041 PPR_2 Repeat 232 281 4.7e-145 472.4 PPR repeat family
XP_057772617.1 Pfam PF01535 PPR Repeat 237 258 2.9e-86 278.6 PPR repeat
XP_057772617.1 Pfam PF13812 PPR_3 Repeat 256 315 5.9e-55 183.9 Pentatricopeptide repeat domain
XP_057772617.1 Pfam PF12854 PPR_1 Repeat 265 296 8.2e-114 371.7 PPR repeat
XP_057772617.1 Pfam PF13041 PPR_2 Repeat 267 316 4.7e-145 472.4 PPR repeat family
XP_057772617.1 Pfam PF01535 PPR Repeat 270 298 2.9e-86 278.6 PPR repeat
XP_057772617.1 Pfam PF13812 PPR_3 Repeat 292 331 5.9e-55 183.9 Pentatricopeptide repeat domain
XP_057772617.1 Pfam PF12854 PPR_1 Repeat 300 331 8.2e-114 371.7 PPR repeat
XP_057772617.1 Pfam PF01535 PPR Repeat 305 331 2.9e-86 278.6 PPR repeat
XP_057772617.1 Pfam PF12854 PPR_1 Repeat 330 358 8.2e-114 371.7 PPR repeat
XP_057772617.1 Pfam PF13812 PPR_3 Repeat 330 379 5.9e-55 183.9 Pentatricopeptide repeat domain
XP_057772617.1 Pfam PF13041 PPR_2 Repeat 332 381 4.7e-145 472.4 PPR repeat family
XP_057772617.1 Pfam PF01535 PPR Repeat 335 365 2.9e-86 278.6 PPR repeat
XP_057772617.1 Pfam PF12854 PPR_1 Repeat 364 393 8.2e-114 371.7 PPR repeat
XP_057772617.1 Pfam PF13041 PPR_2 Repeat 367 415 4.7e-145 472.4 PPR repeat family
XP_057772617.1 Pfam PF01535 PPR Repeat 370 399 2.9e-86 278.6 PPR repeat
XP_057772617.1 Pfam PF13812 PPR_3 Repeat 391 432 5.9e-55 183.9 Pentatricopeptide repeat domain
XP_057772617.1 Pfam PF12854 PPR_1 Repeat 399 431 8.2e-114 371.7 PPR repeat
XP_057772617.1 Pfam PF01535 PPR Repeat 405 432 2.9e-86 278.6 PPR repeat
XP_057772617.1 Pfam PF13041 PPR_2 Repeat 435 471 4.7e-145 472.4 PPR repeat family
XP_057772617.1 Pfam PF13812 PPR_3 Repeat 444 468 5.9e-55 183.9 Pentatricopeptide repeat domain
XP_057772617.1 Pfam PF12854 PPR_1 Repeat 454 485 8.2e-114 371.7 PPR repeat
XP_057772617.1 Pfam PF13041 PPR_2 Repeat 458 507 4.7e-145 472.4 PPR repeat family
XP_057772617.1 Pfam PF01535 PPR Repeat 461 491 2.9e-86 278.6 PPR repeat
XP_057772617.1 Pfam PF13812 PPR_3 Repeat 482 537 5.9e-55 183.9 Pentatricopeptide repeat domain
XP_057772617.1 Pfam PF12854 PPR_1 Repeat 489 522 8.2e-114 371.7 PPR repeat
XP_057772617.1 Pfam PF13041 PPR_2 Repeat 493 542 4.7e-145 472.4 PPR repeat family
XP_057772617.1 Pfam PF01535 PPR Repeat 496 525 2.9e-86 278.6 PPR repeat
XP_057772617.1 Pfam PF12854 PPR_1 Repeat 524 556 8.2e-114 371.7 PPR repeat
XP_057772617.1 Pfam PF13041 PPR_2 Repeat 528 567 4.7e-145 472.4 PPR repeat family
XP_057772617.1 Pfam PF01535 PPR Repeat 531 561 2.9e-86 278.6 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057916633.1
TCTTCTCTCTGTAAAAGTGAATGATTTAAATGATAGTGAAAAAATAGTTGGACAAATGATTTAAAAAAAAAAAAAAAGAGAAATAGAAAACACGAGGGAACGCTGTTTAGAAGAGCGGATTCAAAGCTAAAAAAACGCATTTGGCCCTTTTCACCCGAAACAACGAGAAACCCCCAAACATAAAGAGATCCACTCGAGAATAGTCGAATCTCGCTCGCTGCCATGGATTTCCAAAGAATTATCTTCAATTCTTCATTCAA...
XM_057916634.1
TCTTCTCTCTGTAAAAGTGAATGATTTAAATGATAGTGAAAAAATAGTTGGACAAATGATTTAAAAAAAAAAAAAAAGAGAAATAGAAAACACGAGGGAACGCTGTTTAGAAGAGCGGATTCAAAGCTAAAAAAACGCATTTGGCCCTTTTCACCCGAAACAACGAGAAACCCCCAAACATAAAGAGATCCACTCGAGAATAGTCGAATCTCGCTCGCTGCCATGGATTTCCAAAGAATTATCTTCAATTCTTCATTCAA...

CDS

2 records

下载 CDS FASTA
LOC130992123
ATGGATTTCCAAAGAATTATCTTCAATTCTTCATTCAAATCTTCCACTTTTCACATTGCTTCTCTACCTTTTCACTCATTTCCTCTACCCACATCCAATTTTCATAATGTCAGCCACCAAATCCAAATGAGGCACTTTTCCCGCAAACCCAGATCCAATTTTGATAATGTCAGCCACCGAATGAGCCAACTTTCCGGCAAACCCAGATTCGATTTCGGATCTCTGCGTGAGCCAGATGATGCTATAGCTCTATTTGAGGA...
LOC130992123
ATGGATTTCCAAAGAATTATCTTCAATTCTTCATTCAAATCTTCCACTTTTCACATTGCTTCTCTACCTTTTCACTCATTTCCTCTACCCACATCCAATTTTCATAATGTCAGCCACCAAATCCAAATGAGGCACTTTTCCCGCAAACCCAGATCCAATTTTGATAATGTCAGCCACCGAATGAGCCAACTTTCCGGCAAACCCAGATTCGATTTCGGATCTCTGCGTGAGCCAGATGATGCTATAGCTCTATTTGAGGA...

Protein

2 records

下载 Protein FASTA
XP_057772616.1
MDFQRIIFNSSFKSSTFHIASLPFHSFPLPTSNFHNVSHQIQMRHFSRKPRSNFDNVSHRMSQLSGKPRFDFGSLREPDDAIALFEEMVRMHPRPSVIDFNKCLTAVVKMKQHSVALHLFVKMLRSDVPVNHYTLSIAINCCCGLIRPDCGFAILGSFFKLGHEPTVVTFTTLIKGLMLVGKIVEASKLLEKMSVEADVVTYSTVLNGLCKAGHTFEALDLLRLWEKGSCKPNVYGYNTIIDRLCKDGMVDNALRLFSTL...
XP_057772617.1
MDFQRIIFNSSFKSSTFHIASLPFHSFPLPTSNFHNVSHQIQMRHFSRKPRSNFDNVSHRMSQLSGKPRFDFGSLREPDDAIALFEEMVRMHPRPSVIDFNKCLTAVVKMKQHSVALHLFVKMLRSDVPVNHYTLSIAINCCCGLIRPDCGFAILGSFFKLGHEPTVVTFTTLIKGLMLVGKIVEASKLLEKMSVEADVVTYSTVLNGLCKAGHTFEALDLLRLWEKGSCKPNVYGYNTIIDRLCKDGMVDNALRLFSTL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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