Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001024`

染色体: Chr07 坐标: 7443542-7445967 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001024`
名称	SmilChr07G001024
描述	uncharacterized SmilChr07G001024
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	7443542 - 7445967 / `+`

ID 对照

NCBI Gene ID	`LOC130992136`
GeneID	`130992136`
locus_tag	`-`
NCBI Name	`LOC130992136`
原始查询	`LOC130992136`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os01g0612600; species=rice; confidence=low
产物	hit=Os01g0612600; species=rice; confidence=low
Arabidopsis	`AT1G68140` (AT1G68140) zinc finger/BTB domain protein, putative (DUF1644) [Source:NCBI gene (formerly Entrezgene);Acc:843142] identity=43.7; qcov=0.415; evalue=4.18e-51; confidence=low
Rice	`Os01g0612600` - identity=52.5; qcov=0.445; evalue=3.61e-65; confidence=low
GO	-
KEGG	-
Pfam	PF07800 (DUF1644)
InterPro	-
eggNOG	-
NR	GeneID:130992136

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057772641.1`
2	Cytoplasm	细胞质	1.00000	`XP_057772641.1`
3	Cytoplasmic granule	细胞质颗粒	0.20000	`XP_057772641.1`
4	Chromosome	染色体	0.00000	`XP_057772641.1`
5	Centromere	着丝粒	0.00000	`XP_057772641.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:7444540`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B100,B133,B80,C74,D4
`Chr7:7444646`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B14
`Chr7:7444702`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:7444825`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B123,B128,B136,B32
`Chr7:7444853`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B100,B133,C74,D4
`Chr7:7444954`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A2,B131,B56,B96
`Chr7:7444996`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B100,B133,C74,D4
`Chr7:7445077`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:7445086`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B88
`Chr7:7445110`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B53,C62
`Chr7:7445128`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:7445182`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B97,C14,C32,C68,C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772641.1

458 aa

229

458

DUF1644

PF07800 DUF1644 46-189 aa

XP_057772643.1

458 aa

229

458

DUF1644

PF07800 DUF1644 46-189 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772641.1`	Pfam	`PF07800`	DUF1644	Family	46	189	2.5e-62	210.6	Protein of unknown function (DUF1644)
`XP_057772643.1`	Pfam	`PF07800`	DUF1644	Family	46	189	2.5e-62	210.6	Protein of unknown function (DUF1644)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057916658.1
CCTTCTTCTACCTGAACACATTTTTTGTTTTTCACCCAGCAGCTGTTGCAGTTCTGAAATCTTCAGCCCTTCTGGAGACTTCCACTTGTGTAATTCTACCTGAATTAGCGCCGGATCGGGCCCGGGAAGCAGTTTCGGCGTGCAGAAGAAGAGATCTTGTAGTTTTTAAATTCTCAGAATGCCAAAAGATAGGAGGGTGAATTCCTCATCTTTTGACCGTTCTATGGTGTCCCCTTATTCTTGCAGCTCGAAGATTTCAG...

XM_057916660.1
ATTTTTTGTTTTTCACCCAGCAGCTGTTGCAGTTCTGAAATCTTCAGCCCTTCTGGAGACTTCCACTTGTGTAATTCTACCTGAATTAGCGCCGGATCGGGCCCGGTTTCGGCGTGCAGAAGAAGAGATCTTGTAGTTTTTAAATTCTCAGAATGCCAAAAGATAGGAGGGTGAATTCCTCATCTTTTGACCGTTCTATGGTGTCCCCTTATTCTTGCAGCTCGAAGATTTCAGATCGCAAGAGTAGCAAAAGCTCTTTG...

CDS

2 records

下载 CDS FASTA

LOC130992136
ATGCCAAAAGATAGGAGGGTGAATTCCTCATCTTTTGACCGTTCTATGGTGTCCCCTTATTCTTGCAGCTCGAAGATTTCAGATCGCAAGAGTAGCAAAAGCTCTTTGCCTCATGTCGGGGATGAAAAGGAATGGGATGAAGTTCGATGCCCCATTTGTATGGAGCAGCCCCACAATGCTGTCTTGTTACTCTGCTCTTCCCATGAGAAAGGTTGTCGTCCTTTCATCTGTGACACAAGCTATCGACACTCCAATTGTTT...

Protein

2 records

下载 Protein FASTA

XP_057772641.1
MPKDRRVNSSSFDRSMVSPYSCSSKISDRKSSKSSLPHVGDEKEWDEVRCPICMEQPHNAVLLLCSSHEKGCRPFICDTSYRHSNCFDQYRKSSSAAANLHALLEEQPSELVCPLCRGTVTGWDVLYPARKFLNSKTRSCSLETCSFSGNYAELRKHARLEHPSGRPSEASPNRQAYWTTLEQQRDIEDARVYQSDIEYDLDAWTDWDALVADDFWNARSGLLSLDEWVGDDFWSGGSLFDFPSGISDVEDDLSTLSGLS...

XP_057772643.1
MPKDRRVNSSSFDRSMVSPYSCSSKISDRKSSKSSLPHVGDEKEWDEVRCPICMEQPHNAVLLLCSSHEKGCRPFICDTSYRHSNCFDQYRKSSSAAANLHALLEEQPSELVCPLCRGTVTGWDVLYPARKFLNSKTRSCSLETCSFSGNYAELRKHARLEHPSGRPSEASPNRQAYWTTLEQQRDIEDARVYQSDIEYDLDAWTDWDALVADDFWNARSGLLSLDEWVGDDFWSGGSLFDFPSGISDVEDDLSTLSGLS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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