当前解析结果
SmilChr07G001000| 统一新 Gene ID | SmilChr07G001000 |
|---|---|
| 名称 | SmilChr07G001000 |
| 描述 | uncharacterized SmilChr07G001000 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 7272311 - 7277037 / + |
| NCBI Gene ID | LOC130992139 |
|---|---|
| GeneID | 130992139 |
| locus_tag | - |
| NCBI Name | LOC130992139 |
| 原始查询 | LOC130992139 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0704400; species=rice; confidence=low |
| 产物 | hit=Os06g0704400; species=rice; confidence=low |
| Arabidopsis | AT3G05850 (MUG7)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859] identity=25.4; qcov=0.425; evalue=2.95e-13; confidence=low |
| Rice | Os06g0704400- identity=26; qcov=0.646; evalue=2.86e-13; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF03108 (DBD_Tnp_Mut); PF26130 (PB1-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992139 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057772646.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057772646.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057772646.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057772646.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057772646.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:7273135 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C59,C84 |
Chr7:7273148 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B33,C3 |
Chr7:7273166 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C59,C84 |
Chr7:7273204 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr7:7273215 |
C |
T |
EMS_canonical_SNV | stop_gained | 68 | A13,A20,A21,A25,A3,A4,A7,B10,B101,B107,B109,B110,B122,B124,B128,B129,B13,B134,B137,B16,B2,B26,B28,B29,B30,B33,B35,B36,B42,B43,B44,B64,B65,B67,B73,B74,B75,B76,B8,B80,B82,B84,B85,B95,C11,C13,C15,C18,C21,C25,C33,C34,C37,C44,C52,C58,C59,C61,C62,C65,C69,C75,C77,C82,C83,C84,C9,D11 |
Chr7:7273238 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A21,B101,B13 |
Chr7:7273239 |
TC |
T |
1bp_deletion | frameshift_variant | 8 | A23,A8,B107,B120,B134,B62,C63,C87 |
Chr7:7273245 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B125,B90,B92,C87 |
Chr7:7273249 |
AT |
A |
1bp_deletion | frameshift_variant | 9 | A25,A5,B71,C11,C3,C38,C51,C69,D1 |
Chr7:7273258 |
G |
A |
EMS_canonical_SNV | stop_gained | 44 | A1,A10,A14,A19,A2,A20,A21,A8,B100,B112,B117,B136,B139,B2,B35,B4,B49,B61,B65,B66,B72,B77,B79,B8,B83,B89,C10,C18,C21,C22,C29,C32,C44,C5,C54,C55,C57,C59,C60,C67,C68,C75,C86,D11 |
Chr7:7273259 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B65 |
Chr7:7273259 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772646.1PF26130
PB1-like 5-100 aa
PF03108
DBD_Tnp_Mut 247-310 aa
XP_057772647.1PF26130
PB1-like 5-100 aa
PF03108
DBD_Tnp_Mut 247-310 aa
XP_057772648.1PF26130
PB1-like 5-100 aa
PF03108
DBD_Tnp_Mut 247-310 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772646.1 |
Pfam | PF26130 |
PB1-like | Domain | 5 | 100 | 9.1e-10 | 39.4 | PB1-like domain |
XP_057772646.1 |
Pfam | PF03108 |
DBD_Tnp_Mut | Family | 247 | 310 | 1.7e-07 | 31.5 | MuDR family transposase |
XP_057772647.1 |
Pfam | PF26130 |
PB1-like | Domain | 5 | 100 | 9.1e-10 | 39.4 | PB1-like domain |
XP_057772647.1 |
Pfam | PF03108 |
DBD_Tnp_Mut | Family | 247 | 310 | 1.7e-07 | 31.5 | MuDR family transposase |
XP_057772648.1 |
Pfam | PF26130 |
PB1-like | Domain | 5 | 100 | 9.1e-10 | 39.4 | PB1-like domain |
XP_057772648.1 |
Pfam | PF03108 |
DBD_Tnp_Mut | Family | 247 | 310 | 1.7e-07 | 31.5 | MuDR family transposase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。