Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001007`

染色体: Chr07 坐标: 7330646-7332974 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001007`
名称	SmilChr07G001007
描述	pentatricopeptide repeat-containing protein At1g80150, mitochondrial-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	7330646 - 7332974 / `+`

ID 对照

NCBI Gene ID	`LOC130992144`
GeneID	`130992144`
locus_tag	`-`
NCBI Name	`LOC130992144`
原始查询	`LOC130992144`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At1g80150, mitochondrial-like
产物	pentatricopeptide repeat-containing protein At1g80150%2C mitochondrial-like
Arabidopsis	`AT1G80150` (AT1G80150) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844355] identity=59.3; qcov=0.998; evalue=9.59e-166; confidence=high
Rice	`Os08g0499800` - identity=48.5; qcov=0.954; evalue=3.16e-132; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:130992144

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057772654.1`
2	Nucleus	细胞核	0.00000	`XP_057772654.1`
3	Chromosome	染色体	0.00000	`XP_057772654.1`
4	Centromere	着丝粒	0.00000	`XP_057772654.1`
5	Chromatin	染色质	0.00000	`XP_057772654.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:7331097`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B102,B4,C36,C73
`Chr7:7331110`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B53,C62
`Chr7:7331113`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C71,D6
`Chr7:7331149`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:7331180`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B90,B92,C21
`Chr7:7331185`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A19,B126,B35,B4
`Chr7:7331334`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B72,C81,D6
`Chr7:7331347`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr7:7331359`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A1,C48,C62
`Chr7:7331444`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B56
`Chr7:7331485`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B4,B99,C22,C36,C73
`Chr7:7331713`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C28,C43,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772654.1

411 aa

206

411

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_3

PPR

TPR_24

PPR_1

PPR_2

PPR_3

PPR

PF01535 PPR 117-142 aa PF13812 PPR_3 175-226 aa PF12854 PPR_1 177-205 aa PF13041 PPR_2 181-226 aa PF01535 PPR 183-212 aa PF13812 PPR_3 208-263 aa PF01535 PPR 218-248 aa PF23276 TPR_24 278-378 aa PF12854 PPR_1 287-312 aa PF13041 PPR_2 288-336 aa PF13812 PPR_3 289-335 aa PF01535 PPR 291-320 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772654.1`	Pfam	`PF01535`	PPR	Repeat	117	142	4.6e-21	74.2	PPR repeat
`XP_057772654.1`	Pfam	`PF13812`	PPR_3	Repeat	175	226	1.5e-15	57.7	Pentatricopeptide repeat domain
`XP_057772654.1`	Pfam	`PF12854`	PPR_1	Repeat	177	205	1.1e-31	108.9	PPR repeat
`XP_057772654.1`	Pfam	`PF13041`	PPR_2	Repeat	181	226	7.8e-38	129.1	PPR repeat family
`XP_057772654.1`	Pfam	`PF01535`	PPR	Repeat	183	212	4.6e-21	74.2	PPR repeat
`XP_057772654.1`	Pfam	`PF13812`	PPR_3	Repeat	208	263	1.5e-15	57.7	Pentatricopeptide repeat domain
`XP_057772654.1`	Pfam	`PF01535`	PPR	Repeat	218	248	4.6e-21	74.2	PPR repeat
`XP_057772654.1`	Pfam	`PF23276`	TPR_24	Repeat	278	378	4.8e-09	36.9	Pentatricopeptide repeat-containing protein
`XP_057772654.1`	Pfam	`PF12854`	PPR_1	Repeat	287	312	1.1e-31	108.9	PPR repeat
`XP_057772654.1`	Pfam	`PF13041`	PPR_2	Repeat	288	336	7.8e-38	129.1	PPR repeat family
`XP_057772654.1`	Pfam	`PF13812`	PPR_3	Repeat	289	335	1.5e-15	57.7	Pentatricopeptide repeat domain
`XP_057772654.1`	Pfam	`PF01535`	PPR	Repeat	291	320	4.6e-21	74.2	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057916671.1
CTCAAAACCCTCTCCACTCACCCAAACTAACATATACATACAAATACATGTATGTATATAACCCATCTCTTCTCCTATCTTGATTATCTGATTTATCCGTTCCAATCTCTAAACAAAGCATATCGATTCAATATTCGCATTGTTTTAGCTATTATATCACTTGCCCAGATTCTAATCTGCAATTTGGGGAAACCTCATTTGGATTTTGGGGCTTATTAGTACGTTTTTTGGTTGGATTTTATTTCTGGGATTTTGTGCTG...

CDS

1 records

下载 CDS FASTA

LOC130992144
ATGCTCACTCTGCGACTGATTCGCAGGTTTGGCGCCGTGCACCGTAATCTGGCCACCGCAGCTGTTTCTTCATCCGTTAATAAAGTTATCTCCGCCAGCAGTAGTGCTGGAAAACCTAGTTCAGTAGATGAGCCTGCATTGGTTAAGCTAAAGAAGGAAAGGGACCCTGAGAAACTGTTCAATTTATTTAAGGCCAATGCCACAAATAAGCTTGTTGTTGAGAACCGATTTGTCTTTGAGGACACAGTCTCTAGGTTAGC...

Protein

1 records

下载 Protein FASTA

XP_057772654.1
MLTLRLIRRFGAVHRNLATAAVSSSVNKVISASSSAGKPSSVDEPALVKLKKERDPEKLFNLFKANATNKLVVENRFVFEDTVSRLAGAGRLDYIENLLEHQKTLPQGRREGFIIRIIMLYGRARMTKHAVNTFCDMHLYGCVRTVKSFNAALKVLTESRDLQAINWFLNDVPARFGIVLDAYSFNIVIKGLCEMGILDKAFLVMAGMGKWGLAPDVFTYTLLIEASYKSNWPEIANGLWSRMVLKGCLPNIATFNVRIQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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