当前解析结果
SmilChr07G001019| 统一新 Gene ID | SmilChr07G001019 |
|---|---|
| 名称 | SmilChr07G001019 |
| 描述 | probable receptor-like protein kinase At1g49730 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 7409846 - 7412418 / - |
| NCBI Gene ID | LOC130992151 |
|---|---|
| GeneID | 130992151 |
| locus_tag | - |
| NCBI Name | LOC130992151 |
| 原始查询 | LOC130992151 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable receptor-like protein kinase At1g49730 |
| 产物 | probable receptor-like protein kinase At1g49730 |
| Arabidopsis | AT1G49730 (AT1G49730)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841396] identity=33.5; qcov=0.917; evalue=8.95e-56; confidence=low |
| Rice | Os04g0689400- identity=38.6; qcov=0.775; evalue=1.84e-57; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992151 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057772663.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057772663.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057772663.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057772663.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057772663.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:7410234 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B103,B93,C86,C87 |
Chr7:7410255 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A21,B124,B128,B29,C15 |
Chr7:7410294 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:7410348 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr7:7410354 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B103,B93,C86,C87 |
Chr7:7410405 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A1,A2,B106,C45,C78 |
Chr7:7410408 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr7:7411436 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:7411511 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr7:7411569 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B74 |
Chr7:7411569 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B74 |
Chr7:7411631 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B136,B137,B20,C20,C3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057772663.1PF07714
PK_Tyr_Ser-Thr 91-293 aa
PF00069
Pkinase 91-354 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772663.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 91 | 293 | 3.3e-34 | 119.1 | Protein tyrosine and serine/threonine kinase |
XP_057772663.1 |
Pfam | PF00069 |
Pkinase | Domain | 91 | 354 | 4e-36 | 125.5 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。