Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G000971

染色体: Chr07 坐标: 7031517-7035403 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G000971
名称SmilChr07G000971
描述rac-like GTP-binding protein ARAC8
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向7031517 - 7035403 / -

ID 对照

NCBI Gene IDLOC130992173
GeneID130992173
locus_tag-
NCBI NameLOC130992173
原始查询LOC130992173

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述rac-like GTP-binding protein ARAC8
产物rac-like GTP-binding protein ARAC8
ArabidopsisAT5G62880 (RAC10)
RAC-like 10 [Source:NCBI gene (formerly Entrezgene);Acc:836408]
identity=84; qcov=1.01; evalue=2.78e-129; confidence=high
RiceOs02g0742200 (OsRac3)
-
identity=86.1; qcov=1; evalue=2.69e-133; confidence=high
GOGO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005856 (cytoskeleton); GO:0005886 (plasma membrane); GO:0005938 (cell cortex); GO:0007015 (actin filament organization); GO:0007163 (establishment or maintenance of cell polarity); GO:0007264 (small GTPase-mediated signal transduction); GO:0008360 (regulation of cell shape); GO:0019901 (protein kinase binding); GO:0030865 (cortical cytoskeleton organization); GO:0031410 (cytoplasmic vesicle); GO:0032956 (regulation of actin cytoskeleton organization); GO:0042995 (cell projection)
KEGGsmil04145 (Phagocytosis - Salvia miltiorrhiza (redroot sage)); smil04148 (Efferocytosis - Salvia miltiorrhiza (redroot sage)); smil04517 (IgSF CAM signaling - Salvia miltiorrhiza (redroot sage)); smil04518 (Integrin signaling - Salvia miltiorrhiza (redroot sage)); smil04519 (Cadherin signaling - Salvia miltiorrhiza (redroot sage)); smil04620 (Toll-like receptor signaling pathway - Salvia miltiorrhiza (redroot sage)); smil05100 (Bacterial invasion of epithelial cells - Salvia miltiorrhiza (redroot sage))
PfamPF00071 (Ras); PF08477 (Roc)
InterPro-
eggNOG-
NRGeneID:130992173

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 0.80000 XP_057772698.1
2 Cytoplasm 细胞质 0.20000 XP_057772698.1
3 Cytosol 细胞质基质 0.20000 XP_057772698.1
4 Cell projection 细胞突起 0.20000 XP_057772698.1
5 Nucleus 细胞核 0.00000 XP_057772698.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:7033997 G A EMS_canonical_SNV CDS_variant 2 B35,C5
Chr7:7034006 G A EMS_canonical_SNV CDS_variant 2 A16,A19
Chr7:7034451 C T EMS_canonical_SNV CDS_variant 1 A19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057772698.1
209 aa
N
1
104
209
Roc
Ras
C
PF08477 Roc 10-123 aa PF00071 Ras 10-179 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057772698.1 Pfam PF08477 Roc Domain 10 123 8.3e-22 78.4 Ras of Complex, Roc, domain of DAPkinase
XP_057772698.1 Pfam PF00071 Ras Domain 10 179 1.2e-48 165.5 Ras family

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057916715.1
TCATTTTCTCATCTCATAGTCTCATACTCAAACAACAAAAAAGATCCAGAAAAAATATATAAGTATGGATATATCAAATTTTAGGTATATTTAATCCATTTATGCAGAGTTTCAATGCAACCAATTGAAGTTCCAACAATCCAATTATGAGGCAGAGGCAAAAAGGGTCGGTATTTAAAGCGCCACAGCTTAAAATTGATTACCGCAAGACTTTAGCTTCAACAAACTCTGCCTGTAAAAAAGGTTATTGTATTGATAAG...

CDS

1 records

下载 CDS FASTA
LOC130992173
ATGTCTTCAAGCGTTTCAAGATTCATCAAGTGTGTGACTGTGGGTGATGGTGCTGTTGGCAAGACTTGTATGCTTATTTGCTACACCAGTAACAAATTCCCCACTGACTATATACCAACAGTGTTTGATAATTTCAGTGCAAATGTGGTAGTTGAAGGAACTACTGTCAACTTAGGCCTCTGGGATACAGCAGGCCAAGAAGACTACAATAGGTTGAGGCCTCTGAGCTACAGAGGAGGGGATGTGTTTGTCTTGGCATT...

Protein

1 records

下载 Protein FASTA
XP_057772698.1
MSSSVSRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGGDVFVLAFSLVSRASYENIFKKWIPELDHFAPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKKIGAAYYIECSSKTQQNVKAVFDAAIRVVIKPPQKQKEKKKARKGCFVNMWCGRTIYQE

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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