当前解析结果
SmilChr07G000971| 统一新 Gene ID | SmilChr07G000971 |
|---|---|
| 名称 | SmilChr07G000971 |
| 描述 | rac-like GTP-binding protein ARAC8 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 7031517 - 7035403 / - |
| NCBI Gene ID | LOC130992173 |
|---|---|
| GeneID | 130992173 |
| locus_tag | - |
| NCBI Name | LOC130992173 |
| 原始查询 | LOC130992173 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | rac-like GTP-binding protein ARAC8 |
| 产物 | rac-like GTP-binding protein ARAC8 |
| Arabidopsis | AT5G62880 (RAC10)RAC-like 10 [Source:NCBI gene (formerly Entrezgene);Acc:836408] identity=84; qcov=1.01; evalue=2.78e-129; confidence=high |
| Rice | Os02g0742200 (OsRac3)- identity=86.1; qcov=1; evalue=2.69e-133; confidence=high |
| GO | GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005856 (cytoskeleton); GO:0005886 (plasma membrane); GO:0005938 (cell cortex); GO:0007015 (actin filament organization); GO:0007163 (establishment or maintenance of cell polarity); GO:0007264 (small GTPase-mediated signal transduction); GO:0008360 (regulation of cell shape); GO:0019901 (protein kinase binding); GO:0030865 (cortical cytoskeleton organization); GO:0031410 (cytoplasmic vesicle); GO:0032956 (regulation of actin cytoskeleton organization); GO:0042995 (cell projection) |
| KEGG | smil04145 (Phagocytosis - Salvia miltiorrhiza (redroot sage)); smil04148 (Efferocytosis - Salvia miltiorrhiza (redroot sage)); smil04517 (IgSF CAM signaling - Salvia miltiorrhiza (redroot sage)); smil04518 (Integrin signaling - Salvia miltiorrhiza (redroot sage)); smil04519 (Cadherin signaling - Salvia miltiorrhiza (redroot sage)); smil04620 (Toll-like receptor signaling pathway - Salvia miltiorrhiza (redroot sage)); smil05100 (Bacterial invasion of epithelial cells - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00071 (Ras); PF08477 (Roc) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992173 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057772698.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057772698.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057772698.1 |
| 4 | Cell projection | 细胞突起 | 0.20000 | XP_057772698.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057772698.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:7033997 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B35,C5 |
Chr7:7034006 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A16,A19 |
Chr7:7034451 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A19 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057772698.1PF08477
Roc 10-123 aa
PF00071
Ras 10-179 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772698.1 |
Pfam | PF08477 |
Roc | Domain | 10 | 123 | 8.3e-22 | 78.4 | Ras of Complex, Roc, domain of DAPkinase |
XP_057772698.1 |
Pfam | PF00071 |
Ras | Domain | 10 | 179 | 1.2e-48 | 165.5 | Ras family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。