Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001034`

染色体: Chr07 坐标: 7546044-7550251 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001034`
名称	SmilChr07G001034
描述	26S proteasome regulatory subunit 8 homolog A
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	7546044 - 7550251 / `+`

ID 对照

NCBI Gene ID	`LOC130992203`
GeneID	`130992203`
locus_tag	`-`
NCBI Name	`LOC130992203`
原始查询	`LOC130992203`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	26S proteasome regulatory subunit 8 homolog A
产物	26S proteasome regulatory subunit 8 homolog A
Arabidopsis	`AT5G19990` (RPT6A) regulatory particle triple-A ATPase 6A [Source:NCBI gene (formerly Entrezgene);Acc:832121] identity=90.9; qcov=1; evalue=0; confidence=high
Rice	`Os02g0205300` (OsRPT6) - identity=95.6; qcov=0.93; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0008540 (proteasome regulatory particle, base subcomplex); GO:0016887 (ATP hydrolysis activity); GO:0036402 (proteasome-activating activity); GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process)
KEGG	smil03050 (Proteasome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00004 (AAA); PF07728 (AAA_5); PF16450 (Prot_ATP_ID_OB_C); PF17862 (AAA_lid_3)
InterPro	-
eggNOG	-
NR	GeneID:130992203

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057772735.1`
2	Cytosol	细胞质基质	1.00000	`XP_057772735.1`
3	Cytoplasm	细胞质	0.80000	`XP_057772735.1`
4	Nucleoplasm	核质	0.60000	`XP_057772735.1`
5	Chromosome	染色体	0.00000	`XP_057772735.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:7546320`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B3,C15
`Chr7:7546382`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B136,B137,C20,C3
`Chr7:7548030`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B35
`Chr7:7548030`	`TG`	`T`	1bp_deletion	CDS_variant	1	B35
`Chr7:7548061`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B99
`Chr7:7548061`	`GA`	`G`	1bp_deletion	CDS_variant	1	B99
`Chr7:7549059`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B65,C30
`Chr7:7549870`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B8
`Chr7:7549912`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772735.1

417 aa

208

417

Prot_ATP_ID_OB_C

AAA_5

AAA

AAA_lid_3

PF16450 Prot_ATP_ID_OB_C 83-138 aa PF07728 AAA_5 195-267 aa PF00004 AAA 196-329 aa PF17862 AAA_lid_3 353-395 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772735.1`	Pfam	`PF16450`	Prot_ATP_ID_OB_C	Domain	83	138	3.5e-13	49.9	Proteasomal ATPase OB C-terminal domain
`XP_057772735.1`	Pfam	`PF07728`	AAA_5	Domain	195	267	3.9e-06	27.6	AAA domain (dynein-related subfamily)
`XP_057772735.1`	Pfam	`PF00004`	AAA	Domain	196	329	2.8e-44	151.5	ATPase family associated with various cellular activities (AAA)
`XP_057772735.1`	Pfam	`PF17862`	AAA_lid_3	Domain	353	395	7.8e-15	54.8	AAA+ lid domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057916752.1
AAACGAGCTATTCACGTAATGGACCAGAAATTTTGGGGCCGAAAAGACATATCACGAAAACTTGGGGAATTTCTCAAAATTAATTAAAAATTGTCCCAGTAACAAAACATATTAGGCGTTGTAGACTCTGAGAGACTACAAATTCAAGGATTTTGATACCCTTTTTAGCTTGGCCGAGACGAAAACCCAATTATTCTCCGATCTGTTCAGATATCAAACGACGACGTATCAATGGCGACGGCGGCGATAGATTCTCGGCA...

CDS

1 records

下载 CDS FASTA

LOC130992203
ATGGCGACGGCGGCGATAGATTCTCGGCAGGCCGATGAAGCGAAGCGGCAACACCAACAAGGTGCTGCTGTCGGCGGTGGCGAAGGGCTCCGGCAGTATTATCAGCAGAGTATACAGGATTTGCAGCTGTTGGTCCGTCAGAAATTTCACGATCTCCAGCGCCTCGAAGCTCAGCGCAATGACCTTAATGCTCGAGTGAGATCATTAAAGGAAGAGTTGCAGCTTCTTCAGGAGCCTGGATCATATGTGGGCGAAGTTGT...

Protein

1 records

下载 Protein FASTA

XP_057772735.1
MATAAIDSRQADEAKRQHQQGAAVGGGEGLRQYYQQSIQDLQLLVRQKFHDLQRLEAQRNDLNARVRSLKEELQLLQEPGSYVGEVVKVMGKSKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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