当前解析结果
SmilChr07G001037| 统一新 Gene ID | SmilChr07G001037 |
|---|---|
| 名称 | SmilChr07G001037 |
| 描述 | pectin acetylesterase 7-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 7579863 - 7583504 / - |
| NCBI Gene ID | LOC130992206 |
|---|---|
| GeneID | 130992206 |
| locus_tag | - |
| NCBI Name | LOC130992206 |
| 原始查询 | LOC130992206 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pectin acetylesterase 7-like |
| 产物 | pectin acetylesterase 7-like |
| Arabidopsis | AT5G45280 (AT5G45280)Pectinacetylesterase family protein [Source:NCBI gene (formerly Entrezgene);Acc:834564] identity=40.5; qcov=0.934; evalue=1.71e-89; confidence=medium |
| Rice | Os02g0702400- identity=42; qcov=0.973; evalue=5.48e-93; confidence=medium |
| GO | GO:0009505 (plant-type cell wall); GO:0052793 (pectin acetylesterase activity); GO:0071555 (cell wall organization) |
| KEGG | - |
| Pfam | PF03283 (PAE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992206 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057772737.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057772737.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057772737.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057772737.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057772737.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:7579959 |
G |
GTA |
2bp_insertion | frameshift_variant | 3 | B137,C20,C3 |
Chr7:7579959 |
G |
GTA |
2bp_insertion | CDS_variant | 3 | B137,C20,C3 |
Chr7:7579963 |
A |
AC |
1bp_insertion | frameshift_variant | 3 | B137,C20,C3 |
Chr7:7579963 |
A |
AC |
1bp_insertion | CDS_variant | 3 | B137,C20,C3 |
Chr7:7579987 |
GA |
G |
1bp_deletion | frameshift_variant | 5 | B37,B62,B9,C43,D1 |
Chr7:7579987 |
GA |
G |
1bp_deletion | CDS_variant | 5 | B37,B62,B9,C43,D1 |
Chr7:7580546 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:7580575 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr7:7580817 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B103,B93,C86,C87 |
Chr7:7581304 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C20 |
Chr7:7581311 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B14,B43,C19,C80,D2 |
Chr7:7581348 |
GC |
G |
1bp_deletion | frameshift_variant | 6 | A9,B4,B64,B7,C83,D2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057772737.1PF03283
PAE 25-377 aa
XP_057772738.1PF03283
PAE 24-332 aa
XP_057772739.1PF03283
PAE 19-327 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772737.1 |
Pfam | PF03283 |
PAE | Family | 25 | 377 | 7.4e-120 | 401.1 | Pectinacetylesterase |
XP_057772738.1 |
Pfam | PF03283 |
PAE | Family | 24 | 332 | 7.1e-100 | 335.4 | Pectinacetylesterase |
XP_057772739.1 |
Pfam | PF03283 |
PAE | Family | 19 | 327 | 6.7e-100 | 335.4 | Pectinacetylesterase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。