Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001059`

染色体: Chr07 坐标: 7774019-7783777 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001059`
名称	SmilChr07G001059
描述	coatomer subunit beta'-2
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	7774019 - 7783777 / `-`

ID 对照

NCBI Gene ID	`LOC130992229`
GeneID	`130992229`
locus_tag	`-`
NCBI Name	`LOC130992229`
原始查询	`LOC130992229`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	coatomer subunit beta'-2
产物	coatomer subunit beta'-2
Arabidopsis	`AT1G52360` (AT1G52360) Coatomer, beta' subunit [Source:NCBI gene (formerly Entrezgene);Acc:841666] identity=84.1; qcov=1.01; evalue=0; confidence=high
Rice	`Os06g0143900` (OsWD40-125) - identity=82.7; qcov=1; evalue=0; confidence=high
GO	GO:0005198 (structural molecule activity); GO:0005515 (protein binding); GO:0006886 (intracellular protein transport); GO:0006888 (endoplasmic reticulum to Golgi vesicle-mediated transport); GO:0006890 (retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum); GO:0006891 (intra-Golgi vesicle-mediated transport); GO:0030126 (COPI vesicle coat)
KEGG	-
Pfam	PF00400 (WD40); PF04053 (B-prop_COPA_B_2nd); PF23953 (TPR_COPA_B)
InterPro	-
eggNOG	-
NR	GeneID:130992229

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vesicle	囊泡	1.00000	`XP_057772761.1`
2	Golgi apparatus	高尔基体	0.80000	`XP_057772761.1`
3	Trans-golgi network	Trans-golgi network	0.60000	`XP_057772761.1`
4	Endosome	内体	0.60000	`XP_057772763.1`
5	Cytosol	细胞质基质	0.40000	`XP_057772763.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:7774509`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A1,D6
`Chr7:7775121`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B126,C11,C69
`Chr7:7775126`	`CCT`	`C`	2bp_deletion	frameshift_variant	108	A1,A18,A21,A24,A3,A4,A6,A7,A8,B1,B10,B100,B101,B106,B108,B11,B111,B112,B113,B118,B12,B120,B125,B126,B128,B134,B138,B139,B15,B17,B20,B24,B26,B27,B28,B30,B41,B43,B44,B47,B48,B49,B5,B50,B52,B53,B55,B57,B58,B59,B6,B60,B61,B62,B67,B68,B71,B74,B75,B76,B79,B8,B82,B88,B93,B98,C1,C11,C13,C18,C19,C2,C20,C22,C23,C25,C26,C27,C29,C30,C31,C33,C36,C37,C39,C4,C43,C46,C48,C5,C54,C55,C56,C6,C61,C62,C64,C66,C67,C68,C69,C72,C78,C80,D2,D3,D5,D8
`Chr7:7775150`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C39,C5
`Chr7:7775230`	`T`	`TAA`	2bp_insertion	frameshift_variant	59	A3,A4,A8,B10,B11,B111,B112,B113,B120,B125,B126,B134,B138,B15,B17,B24,B27,B42,B44,B47,B48,B50,B51,B52,B53,B6,B60,B61,B62,B67,B79,B8,B88,B98,C13,C18,C19,C2,C22,C23,C25,C29,C30,C31,C39,C4,C43,C46,C55,C6,C64,C66,C67,C72,C80,D2,D3,D5,D8
`Chr7:7775252`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C30
`Chr7:7775900`	`AG`	`A`	1bp_deletion	frameshift_variant	6	A3,B11,B125,B81,C13,C80
`Chr7:7775925`	`G`	`A`	EMS_canonical_SNV	stop_gained	94	A1,A18,A21,A24,A3,A4,A6,A8,B1,B10,B100,B101,B106,B108,B11,B111,B112,B113,B117,B120,B124,B125,B126,B128,B134,B138,B139,B14,B15,B17,B20,B24,B26,B27,B28,B37,B4,B42,B43,B47,B48,B52,B53,B57,B58,B6,B60,B61,B67,B68,B69,B71,B74,B76,B79,B8,B81,B88,B9,B93,B98,C1,C13,C14,C18,C2,C23,C25,C26,C27,C29,C30,C31,C37,C39,C4,C44,C46,C48,C52,C54,C55,C61,C62,C66,C67,C68,C69,C72,C80,C82,D2,D3,D8
`Chr7:7775971`	`AT`	`A`	1bp_deletion	frameshift_variant	2	A21,B20
`Chr7:7775971`	`AT`	`A`	1bp_deletion	CDS_variant	2	A21,B20
`Chr7:7775973`	`GC`	`G`	1bp_deletion	frameshift_variant	2	A21,B20
`Chr7:7775973`	`GC`	`G`	1bp_deletion	CDS_variant	2	A21,B20

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772761.1

922 aa

461

922

WD40

B-prop_COPA_B_2nd

TPR_COPA_B

PF00400 WD40 15-43 aa PF00400 WD40 91-127 aa PF00400 WD40 134-171 aa PF00400 WD40 177-215 aa PF00400 WD40 220-256 aa PF04053 B-prop_COPA_B_2nd 319-578 aa PF23953 TPR_COPA_B 595-775 aa

XP_057772762.1

922 aa

461

922

WD40

B-prop_COPA_B_2nd

TPR_COPA_B

PF00400 WD40 15-43 aa PF00400 WD40 91-127 aa PF00400 WD40 134-171 aa PF00400 WD40 177-215 aa PF00400 WD40 220-256 aa PF04053 B-prop_COPA_B_2nd 319-578 aa PF23953 TPR_COPA_B 595-775 aa

XP_057772763.1

918 aa

459

918

WD40

B-prop_COPA_B_2nd

TPR_COPA_B

PF00400 WD40 15-43 aa PF00400 WD40 91-127 aa PF00400 WD40 134-171 aa PF00400 WD40 177-215 aa PF00400 WD40 220-256 aa PF04053 B-prop_COPA_B_2nd 319-578 aa PF23953 TPR_COPA_B 595-775 aa

XP_057772764.1

918 aa

459

918

WD40

B-prop_COPA_B_2nd

TPR_COPA_B

PF00400 WD40 15-43 aa PF00400 WD40 91-127 aa PF00400 WD40 134-171 aa PF00400 WD40 177-215 aa PF00400 WD40 220-256 aa PF04053 B-prop_COPA_B_2nd 319-578 aa PF23953 TPR_COPA_B 595-775 aa

XP_057772765.1

918 aa

459

918

WD40

B-prop_COPA_B_2nd

TPR_COPA_B

PF00400 WD40 15-43 aa PF00400 WD40 91-127 aa PF00400 WD40 134-171 aa PF00400 WD40 177-215 aa PF00400 WD40 220-256 aa PF04053 B-prop_COPA_B_2nd 319-578 aa PF23953 TPR_COPA_B 595-775 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772761.1`	Pfam	`PF00400`	WD40	Repeat	15	43	1.4e-51	171.5	WD domain, G-beta repeat
`XP_057772761.1`	Pfam	`PF00400`	WD40	Repeat	91	127	1.4e-51	171.5	WD domain, G-beta repeat
`XP_057772761.1`	Pfam	`PF00400`	WD40	Repeat	134	171	1.4e-51	171.5	WD domain, G-beta repeat
`XP_057772761.1`	Pfam	`PF00400`	WD40	Repeat	177	215	1.4e-51	171.5	WD domain, G-beta repeat
`XP_057772761.1`	Pfam	`PF00400`	WD40	Repeat	220	256	1.4e-51	171.5	WD domain, G-beta repeat
`XP_057772761.1`	Pfam	`PF04053`	B-prop_COPA_B_2nd	Repeat	319	578	5e-89	298.8	COPA/B second beta-propeller
`XP_057772761.1`	Pfam	`PF23953`	TPR_COPA_B	Repeat	595	775	1e-81	273.7	COPA/B TPR domain
`XP_057772762.1`	Pfam	`PF00400`	WD40	Repeat	15	43	1.4e-51	171.5	WD domain, G-beta repeat
`XP_057772762.1`	Pfam	`PF00400`	WD40	Repeat	91	127	1.4e-51	171.5	WD domain, G-beta repeat
`XP_057772762.1`	Pfam	`PF00400`	WD40	Repeat	134	171	1.4e-51	171.5	WD domain, G-beta repeat
`XP_057772762.1`	Pfam	`PF00400`	WD40	Repeat	177	215	1.4e-51	171.5	WD domain, G-beta repeat
`XP_057772762.1`	Pfam	`PF00400`	WD40	Repeat	220	256	1.4e-51	171.5	WD domain, G-beta repeat
`XP_057772762.1`	Pfam	`PF04053`	B-prop_COPA_B_2nd	Repeat	319	578	5e-89	298.8	COPA/B second beta-propeller
`XP_057772762.1`	Pfam	`PF23953`	TPR_COPA_B	Repeat	595	775	1e-81	273.7	COPA/B TPR domain
`XP_057772763.1`	Pfam	`PF00400`	WD40	Repeat	15	43	1.3e-51	171.5	WD domain, G-beta repeat
`XP_057772763.1`	Pfam	`PF00400`	WD40	Repeat	91	127	1.3e-51	171.5	WD domain, G-beta repeat
`XP_057772763.1`	Pfam	`PF00400`	WD40	Repeat	134	171	1.3e-51	171.5	WD domain, G-beta repeat
`XP_057772763.1`	Pfam	`PF00400`	WD40	Repeat	177	215	1.3e-51	171.5	WD domain, G-beta repeat
`XP_057772763.1`	Pfam	`PF00400`	WD40	Repeat	220	256	1.3e-51	171.5	WD domain, G-beta repeat
`XP_057772763.1`	Pfam	`PF04053`	B-prop_COPA_B_2nd	Repeat	319	578	4.9e-89	298.8	COPA/B second beta-propeller
`XP_057772763.1`	Pfam	`PF23953`	TPR_COPA_B	Repeat	595	775	1e-81	273.7	COPA/B TPR domain
`XP_057772764.1`	Pfam	`PF00400`	WD40	Repeat	15	43	1.3e-51	171.5	WD domain, G-beta repeat
`XP_057772764.1`	Pfam	`PF00400`	WD40	Repeat	91	127	1.3e-51	171.5	WD domain, G-beta repeat
`XP_057772764.1`	Pfam	`PF00400`	WD40	Repeat	134	171	1.3e-51	171.5	WD domain, G-beta repeat
`XP_057772764.1`	Pfam	`PF00400`	WD40	Repeat	177	215	1.3e-51	171.5	WD domain, G-beta repeat
`XP_057772764.1`	Pfam	`PF00400`	WD40	Repeat	220	256	1.3e-51	171.5	WD domain, G-beta repeat
`XP_057772764.1`	Pfam	`PF04053`	B-prop_COPA_B_2nd	Repeat	319	578	4.9e-89	298.8	COPA/B second beta-propeller
`XP_057772764.1`	Pfam	`PF23953`	TPR_COPA_B	Repeat	595	775	1e-81	273.7	COPA/B TPR domain
`XP_057772765.1`	Pfam	`PF00400`	WD40	Repeat	15	43	1.3e-51	171.5	WD domain, G-beta repeat
`XP_057772765.1`	Pfam	`PF00400`	WD40	Repeat	91	127	1.3e-51	171.5	WD domain, G-beta repeat
`XP_057772765.1`	Pfam	`PF00400`	WD40	Repeat	134	171	1.3e-51	171.5	WD domain, G-beta repeat
`XP_057772765.1`	Pfam	`PF00400`	WD40	Repeat	177	215	1.3e-51	171.5	WD domain, G-beta repeat
`XP_057772765.1`	Pfam	`PF00400`	WD40	Repeat	220	256	1.3e-51	171.5	WD domain, G-beta repeat
`XP_057772765.1`	Pfam	`PF04053`	B-prop_COPA_B_2nd	Repeat	319	578	4.9e-89	298.8	COPA/B second beta-propeller
`XP_057772765.1`	Pfam	`PF23953`	TPR_COPA_B	Repeat	595	775	1e-81	273.7	COPA/B TPR domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XR_009091260.1
AAATTTACACACTCGCTGTGATATATGCACAGCGAAGCCTCAACTTTCTCTCTCTGATTACATAATACGCGCACTTTCTCTCTCTTGATCTCAGTATTCAAGTGCGTGTTTCTCGACTCACTCACTCTTCGCAGATCTTACACTCCGATCTCCAGGCTTCCCAATTGTAAACAAAATCTGTGAAAATGCCGCTCAGATTAGAAATCAAGAGGAAGCTTGCACAACGATCAGAAAGAGTAAAATCAGTGGATCTACATCCA...

XM_057916780.1
AAATTTACACACTCGCTGTGATATATGCACAGCGAAGCCTCAACTTTCTCTCTCTGATTACATAATACGCGCACTTTCTCTCTCTTGATCTCAGTATTCAAGTGCGTGTTTCTCGACTCACTCACTCTTCGCAGATCTTACACTCCGATCTCCAGGCTTCCCAATTGTAAACAAAATCTGTGAAAATGCCGCTCAGATTAGAAATCAAGAGGAAGCTTGCACAACGATCAGAAAGAGTAAAATCAGTGGATCTACATCCA...

CDS

5 records

下载 CDS FASTA

LOC130992229
ATGCCGCTCAGATTAGAAATCAAGAGGAAGCTTGCACAACGATCAGAAAGAGTAAAATCAGTGGATCTACATCCAACAGAGCCATGGATATTGGCAAGTTTGTATTCAGGGACTGTTTGTATTTGGAATTACCAGACTCAGACAATGGTTAAATCTTTTGAGGTTACAGAACTACCAGTTAGATCAGCAAAATTTATTGCACGGAAGCAGTGGGTTGTTGCTGGTGCTGACGATATGTTCATTCGTGTGTACAATTACAA...

Protein

5 records

下载 Protein FASTA

XP_057772761.1
MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQTQTMVKSFEVTELPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWLCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHLKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT...

XP_057772762.1
MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQTQTMVKSFEVTELPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWLCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHLKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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