当前解析结果
SmilChr07G001072| 统一新 Gene ID | SmilChr07G001072 |
|---|---|
| 名称 | SmilChr07G001072 |
| 描述 | kinesin-like protein KIN-13B |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 7878623 - 7883909 / - |
| NCBI Gene ID | LOC130992244 |
|---|---|
| GeneID | 130992244 |
| locus_tag | - |
| NCBI Name | LOC130992244 |
| 原始查询 | LOC130992244 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | kinesin-like protein KIN-13B |
| 产物 | kinesin-like protein KIN-13B |
| Arabidopsis | AT3G16060 (AT3G16060)ATP binding microtubule motor family protein [Source:NCBI gene (formerly Entrezgene);Acc:820851] identity=69.5; qcov=1.01; evalue=0; confidence=high |
| Rice | Os05g0154700 (SRS3)- identity=65.9; qcov=0.653; evalue=0; confidence=high |
| GO | GO:0003777 (microtubule motor activity); GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0008017 (microtubule binding) |
| KEGG | smil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00225 (Kinesin); PF16796 (Microtub_bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992244 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057772778.1 |
| 2 | Phragmoplast | Phragmoplast | 0.60000 | XP_057772778.1 |
| 3 | Spindle | Spindle | 0.40000 | XP_057772778.1 |
| 4 | Spindle pole | Spindle pole | 0.40000 | XP_057772778.1 |
| 5 | Chromosome | 染色体 | 0.20000 | XP_057772778.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:7879477 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A25,A5,B71,C38,C51 |
Chr7:7879526 |
T |
TTA |
2bp_insertion | frameshift_variant | 2 | B133,B16 |
Chr7:7879526 |
T |
TTA |
2bp_insertion | CDS_variant | 2 | B133,B16 |
Chr7:7879622 |
CA |
C |
1bp_deletion | frameshift_variant | 21 | A16,A20,B109,B125,B140,B36,B47,B50,B53,B78,B82,C11,C22,C43,C47,C49,C69,C75,C83,C86,D3 |
Chr7:7879624 |
A |
AT |
1bp_insertion | frameshift_variant | 21 | A16,A20,B109,B125,B140,B36,B47,B50,B53,B78,B82,C11,C22,C43,C47,C49,C69,C75,C83,C86,D3 |
Chr7:7879689 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C30,C5 |
Chr7:7879938 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A25,A5,B71,C38,C51 |
Chr7:7879995 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B118,B8,C53,D5 |
Chr7:7880544 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C30,C5 |
Chr7:7880722 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B66,C23,C33,C46 |
Chr7:7880824 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr7:7880830 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B115,B12,B68,B93,C1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057772778.1PF16796
Microtub_bd 185-326 aa
PF00225
Kinesin 191-507 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772778.1 |
Pfam | PF16796 |
Microtub_bd | Domain | 185 | 326 | 1.5e-14 | 54.9 | Microtubule binding |
XP_057772778.1 |
Pfam | PF00225 |
Kinesin | Domain | 191 | 507 | 8.7e-101 | 337.9 | Kinesin motor domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。