当前解析结果
SmilChr07G001079| 统一新 Gene ID | SmilChr07G001079 |
|---|---|
| 名称 | SmilChr07G001079 |
| 描述 | uncharacterized SmilChr07G001079 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 7918522 - 7922319 / + |
| NCBI Gene ID | LOC130992251 |
|---|---|
| GeneID | 130992251 |
| locus_tag | - |
| NCBI Name | LOC130992251 |
| 原始查询 | LOC130992251 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | plastid transcriptionally active 17 [Source:NCBI gene (formerly Entrezgene);Acc:844387]; symbol=PTAC17; hit=AT1G80480; species=arabidopsis; confidence=high |
| 产物 | plastid transcriptionally active 17 [Source:NCBI gene (formerly Entrezgene);Acc:844387]; symbol=PTAC17; hit=AT1G80480; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G80480 (PTAC17)plastid transcriptionally active 17 [Source:NCBI gene (formerly Entrezgene);Acc:844387] identity=68.2; qcov=1.01; evalue=0; confidence=high |
| Rice | Os02g0800000- identity=77; qcov=0.795; evalue=0; confidence=high |
| GO | GO:0005737 (cytoplasm) |
| KEGG | - |
| Pfam | PF02492 (cobW); PF07683 (CobW_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992251 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057772786.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057772786.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057772786.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057772786.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057772786.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:7918886 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C77 |
Chr7:7918929 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B44,D10 |
Chr7:7918944 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A13 |
Chr7:7918996 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B59,C5 |
Chr7:7919534 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C1,C4 |
Chr7:7919880 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B12 |
Chr7:7919880 |
AG |
A |
1bp_deletion | CDS_variant | 1 | B12 |
Chr7:7919913 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B12,B55 |
Chr7:7920107 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr7:7920119 |
C |
T |
EMS_canonical_SNV | stop_gained | 16 | A14,A5,B100,B12,B29,B3,B32,B4,B46,B57,B78,B91,C36,C37,C46,C84 |
Chr7:7920123 |
CG |
C |
1bp_deletion | frameshift_variant | 8 | B112,B124,B125,B15,B90,B92,C48,C53 |
Chr7:7920193 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772786.1PF02492
cobW 103-287 aa
PF07683
CobW_C 369-421 aa
XP_057772787.1PF02492
cobW 103-287 aa
PF07683
CobW_C 369-463 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772786.1 |
Pfam | PF02492 |
cobW | Domain | 103 | 287 | 6.8e-59 | 199.2 | CobW/HypB/UreG, nucleotide-binding domain |
XP_057772786.1 |
Pfam | PF07683 |
CobW_C | Domain | 369 | 421 | 1.3e-07 | 32.0 | Cobalamin synthesis protein cobW C-terminal domain |
XP_057772787.1 |
Pfam | PF02492 |
cobW | Domain | 103 | 287 | 6.1e-59 | 199.4 | CobW/HypB/UreG, nucleotide-binding domain |
XP_057772787.1 |
Pfam | PF07683 |
CobW_C | Domain | 369 | 463 | 2.6e-23 | 82.4 | Cobalamin synthesis protein cobW C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。