Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003374`

染色体: Chr01 坐标: 52441586-52443773 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003374`
名称	SmilChr01G003374
描述	pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	52441586 - 52443773 / `+`

ID 对照

NCBI Gene ID	`LOC130992274`
GeneID	`130992274`
locus_tag	`-`
NCBI Name	`LOC130992274`
原始查询	`LOC130992274`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like
产物	pentatricopeptide repeat-containing protein At2g29760%2C chloroplastic-like
Arabidopsis	`AT2G29760` (OTP81) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817526] identity=35.1; qcov=0.979; evalue=5.2e-133; confidence=medium
Rice	`Os07g0260000` - identity=52.8; qcov=0.582; evalue=4.01e-135; confidence=medium
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF13041 (PPR_2)
InterPro	-
eggNOG	-
NR	GeneID:130992274

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057772823.1`
2	Chloroplast	叶绿体	0.20000	`XP_057772823.1`
3	Nucleus	细胞核	0.00000	`XP_057772823.1`
4	Chromosome	染色体	0.00000	`XP_057772823.1`
5	Centromere	着丝粒	0.00000	`XP_057772823.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:52441714`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr1:52441824`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr1:52441968`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C65
`Chr1:52441968`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr1:52442060`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B56
`Chr1:52442064`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B22,C26,C76
`Chr1:52442084`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B56
`Chr1:52442090`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B56
`Chr1:52442091`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B56
`Chr1:52442095`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B56
`Chr1:52442142`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D2
`Chr1:52442171`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772823.1

622 aa

311

622

PPR

PPR_2

PPR

PPR_2

PPR

PPR_2

PPR

PF01535 PPR 168-197 aa PF01535 PPR 199-228 aa PF13041 PPR_2 228-260 aa PF01535 PPR 230-259 aa PF01535 PPR 262-291 aa PF13041 PPR_2 289-338 aa PF01535 PPR 292-321 aa PF01535 PPR 366-392 aa PF13041 PPR_2 392-439 aa PF01535 PPR 394-423 aa PF01535 PPR 430-455 aa PF01535 PPR 466-491 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772823.1`	Pfam	`PF01535`	PPR	Repeat	168	197	3.9e-73	237.4	PPR repeat
`XP_057772823.1`	Pfam	`PF01535`	PPR	Repeat	199	228	3.9e-73	237.4	PPR repeat
`XP_057772823.1`	Pfam	`PF13041`	PPR_2	Repeat	228	260	8.4e-71	234.6	PPR repeat family
`XP_057772823.1`	Pfam	`PF01535`	PPR	Repeat	230	259	3.9e-73	237.4	PPR repeat
`XP_057772823.1`	Pfam	`PF01535`	PPR	Repeat	262	291	3.9e-73	237.4	PPR repeat
`XP_057772823.1`	Pfam	`PF13041`	PPR_2	Repeat	289	338	8.4e-71	234.6	PPR repeat family
`XP_057772823.1`	Pfam	`PF01535`	PPR	Repeat	292	321	3.9e-73	237.4	PPR repeat
`XP_057772823.1`	Pfam	`PF01535`	PPR	Repeat	366	392	3.9e-73	237.4	PPR repeat
`XP_057772823.1`	Pfam	`PF13041`	PPR_2	Repeat	392	439	8.4e-71	234.6	PPR repeat family
`XP_057772823.1`	Pfam	`PF01535`	PPR	Repeat	394	423	3.9e-73	237.4	PPR repeat
`XP_057772823.1`	Pfam	`PF01535`	PPR	Repeat	430	455	3.9e-73	237.4	PPR repeat
`XP_057772823.1`	Pfam	`PF01535`	PPR	Repeat	466	491	3.9e-73	237.4	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057916840.1
ATTCTTTTTATAGTGTCGAATGTAGCACAGAGAGTTTCCGCCGCTGTTCTGCTTCAAAACTAATTGAGCTCCTTTCTTTATAGGATTGCTTCTTCATCACCCATGAAAATCGATGGAGAATTATCTGGGCATTATCTTGCAGAAATGCAAAACTGTAAATCAATTGAAACAGACCCATCTTCAAGTACTCATCAATGGCTTAAAACATAGCAATTTTCTAGCTGTCAAGCTCATTTCACTTTCCTCAGACTTCATCTCTC...

CDS

1 records

下载 CDS FASTA

LOC130992274
ATGGAGAATTATCTGGGCATTATCTTGCAGAAATGCAAAACTGTAAATCAATTGAAACAGACCCATCTTCAAGTACTCATCAATGGCTTAAAACATAGCAATTTTCTAGCTGTCAAGCTCATTTCACTTTCCTCAGACTTCATCTCTCTCGATCACGCAGTCAAACTGTTCGGCGATTTGCCGAGCCCAAATCTCATATCCCACAACATTCTGATGAAATGCTCGATTGGGAAGTCTCACAAAACCGCCGCCGCCGCTTA...

Protein

1 records

下载 Protein FASTA

XP_057772823.1
MENYLGIILQKCKTVNQLKQTHLQVLINGLKHSNFLAVKLISLSSDFISLDHAVKLFGDLPSPNLISHNILMKCSIGKSHKTAAAAYNRLRELGISPNSFTFTFLLSCFASFGKLRCGEIVHGNVLKIGFAPSSVFVMNNLLDFYGKCAADLGVVAKVFDEMPERDVVSWNTMIRSYMSYGDVARAMRLFEAMPGKNLVSWNTVVSGLVKAGKMEAADEVFRRMHERNSVSWNVMISGYVKLGEVGSAREVFDQMPERSV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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