当前解析结果
SmilChr07G001105| 统一新 Gene ID | SmilChr07G001105 |
|---|---|
| 名称 | SmilChr07G001105 |
| 描述 | topless-related protein 4 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 8162591 - 8170793 / + |
| NCBI Gene ID | LOC130992280 |
|---|---|
| GeneID | 130992280 |
| locus_tag | - |
| NCBI Name | LOC130992280 |
| 原始查询 | LOC130992280 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | topless-related protein 4 |
| 产物 | topless-related protein 4 |
| Arabidopsis | AT3G15880 (WSIP2)WUS-interacting protein 2 [Source:NCBI gene (formerly Entrezgene);Acc:820831] identity=73.3; qcov=1.01; evalue=0; confidence=high |
| Rice | Os03g0254700 (OsWD40-66)protein TPR3-like [Source:NCBI gene (formerly Entrezgene);Acc:4332285] identity=70; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding); GO:0006355 (regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | PF00400 (WD40); PF17814 (LisH_TPL); PF21359 (zf_topless); PF21889 (TPR1-like_2nd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992280 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057772828.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057772828.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057772828.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057772828.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057772828.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:8165459 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:8165487 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr7:8167287 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A16,A3,B131,C33,D5 |
Chr7:8167389 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C33,C46 |
Chr7:8168873 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,B124,B128,B29 |
Chr7:8170132 |
GT |
G |
1bp_deletion | frameshift_variant | 5 | B10,B73,B8,C53,C77 |
Chr7:8170132 |
GT |
G |
1bp_deletion | CDS_variant | 5 | B10,B73,B8,C53,C77 |
Chr7:8170154 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772828.1PF17814
LisH_TPL 5-34 aa
PF21889
TPR1-like_2nd 37-161 aa
PF21359
zf_topless 164-204 aa
PF00400
WD40 459-494 aa
PF00400
WD40 500-537 aa
PF00400
WD40 915-948 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772828.1 |
Pfam | PF17814 |
LisH_TPL | Domain | 5 | 34 | 4.8e-13 | 49.2 | LisH-like dimerisation domain |
XP_057772828.1 |
Pfam | PF21889 |
TPR1-like_2nd | Domain | 37 | 161 | 1.7e-62 | 210.0 | TPR1-like, CTLH-containing domain |
XP_057772828.1 |
Pfam | PF21359 |
zf_topless | Domain | 164 | 204 | 6.5e-25 | 87.2 | TOPLESS, zinc finger domain |
XP_057772828.1 |
Pfam | PF00400 |
WD40 | Repeat | 459 | 494 | 1.2e-32 | 111.7 | WD domain, G-beta repeat |
XP_057772828.1 |
Pfam | PF00400 |
WD40 | Repeat | 500 | 537 | 1.2e-32 | 111.7 | WD domain, G-beta repeat |
XP_057772828.1 |
Pfam | PF00400 |
WD40 | Repeat | 915 | 948 | 1.2e-32 | 111.7 | WD domain, G-beta repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。