当前解析结果
SmilChr07G001109| 统一新 Gene ID | SmilChr07G001109 |
|---|---|
| 名称 | SmilChr07G001109 |
| 描述 | palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 8181738 - 8183995 / + |
| NCBI Gene ID | LOC130992282 |
|---|---|
| GeneID | 130992282 |
| locus_tag | - |
| NCBI Name | LOC130992282 |
| 原始查询 | LOC130992282 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like |
| 产物 | palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase%2C chloroplastic-like |
| Arabidopsis | AT3G15850 (FAD5)fatty acid desaturase 5 [Source:NCBI gene (formerly Entrezgene);Acc:820828] identity=67.7; qcov=0.901; evalue=8.26e-169; confidence=high |
| Rice | -- |
| GO | GO:0005789 (endoplasmic reticulum membrane); GO:0006629 (lipid metabolic process); GO:0009979 (GO:0009979); GO:0016717 (oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water) |
| KEGG | - |
| Pfam | PF00487 (FA_desaturase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992282 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057772830.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 1.00000 | XP_057772830.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057772830.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057772830.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057772830.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:8181924 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B3,C15 |
Chr7:8181954 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B108,D7 |
Chr7:8182028 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C33,C46 |
Chr7:8182034 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B11,B17,B6,C21,C67 |
Chr7:8182241 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B78,B82 |
Chr7:8182241 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B78,B82 |
Chr7:8182409 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B3,C15 |
Chr7:8182653 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B12,B55 |
Chr7:8182654 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr7:8183500 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr7:8183737 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr7:8183877 |
C |
CTA |
2bp_insertion | stop_gained,frameshift_variant | 9 | A20,B109,B36,C11,C49,C69,C75,C83,C86 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057772830.1PF00487
FA_desaturase 139-351 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772830.1 |
Pfam | PF00487 |
FA_desaturase | Domain | 139 | 351 | 7.5e-18 | 65.9 | Fatty acid desaturase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。