Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G001111

染色体: Chr07 坐标: 8207948-8209238 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G001111
名称SmilChr07G001111
描述pseudo histidine-containing phosphotransfer protein 6
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向8207948 - 8209238 / +

ID 对照

NCBI Gene IDLOC130992286
GeneID130992286
locus_tag-
NCBI NameLOC130992286
原始查询LOC130992286

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pseudo histidine-containing phosphotransfer protein 6
产物pseudo histidine-containing phosphotransfer protein 6
ArabidopsisAT1G80100 (HP6)
histidine phosphotransfer protein 6 [Source:NCBI gene (formerly Entrezgene);Acc:844350]
identity=76.5; qcov=0.962; evalue=4.36e-66; confidence=high
RiceOs01g0743800 (OsPHP1)
-
identity=40; qcov=0.943; evalue=4.77e-34; confidence=medium
GOGO:0000160 (phosphorelay signal transduction system); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0009736 (cytokinin-activated signaling pathway); GO:0009927 (histidine phosphotransfer kinase activity); GO:0016310 (phosphorylation); GO:0043424 (protein histidine kinase binding)
KEGGsmil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
PfamPF01627 (Hpt)
InterPro-
eggNOG-
NRGeneID:130992286

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057772834.1
2 Cytosol 细胞质基质 1.00000 XP_057772834.1
3 Nucleus 细胞核 0.60000 XP_057772834.1
4 Cytoplasmic vesicle 细胞质囊泡 0.20000 XP_057772834.1
5 Acrosome Acrosome 0.20000 XP_057772834.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:8208152 C T EMS_canonical_SNV CDS_variant 3 B112,B78,C4
Chr7:8208258 C T EMS_canonical_SNV stop_gained 28 B104,B105,B112,B121,B125,B2,B22,B25,B34,B6,B67,B72,B81,B93,C11,C29,C31,C33,C36,C40,C46,C47,C51,C53,C65,C69,C70,C73
Chr7:8208308 G A EMS_canonical_SNV CDS_variant 1 B104
Chr7:8208314 G A EMS_canonical_SNV CDS_variant 1 B83
Chr7:8208336 G A EMS_canonical_SNV CDS_variant 4 B136,B55,C14,C23
Chr7:8208342 G A EMS_canonical_SNV CDS_variant 3 B106,C80,D5
Chr7:8208361 TC T 1bp_deletion frameshift_variant 2 B100,B140
Chr7:8208361 TC T 1bp_deletion CDS_variant 2 B100,B140
Chr7:8208460 T TG 1bp_insertion frameshift_variant 66 A1,A13,A15,A16,A20,A6,A8,B105,B110,B111,B114,B117,B120,B134,B135,B14,B28,B29,B3,B30,B31,B35,B41,B44,B51,B58,B67,B73,B79,B8,B84,B91,B98,B99,C1,C11,C13,C16,C21,C30,C32,C36,C37,C47,C5,C50,C51,C54,C68,C69,C70,C71,C72,C76,C77,C80,C81,C83,C84,C87,C9,D1,D11,D3,D5,D9
Chr7:8208474 ACT A 2bp_deletion frameshift_variant 14 A1,A20,B30,B35,B41,B51,B8,C32,C68,C69,C76,C9,D1,D3
Chr7:8208477 A AT 1bp_insertion frameshift_variant 66 A13,A15,A16,A20,A6,A8,B105,B110,B111,B114,B117,B120,B125,B130,B134,B135,B14,B28,B29,B3,B31,B44,B45,B58,B67,B74,B79,B81,B84,B88,B91,B93,B98,B99,C1,C13,C16,C17,C21,C30,C36,C37,C38,C42,C47,C5,C50,C51,C54,C69,C70,C71,C72,C76,C77,C79,C80,C81,C83,C84,C86,C87,C9,D11,D5,D9
Chr7:8208480 A AT 1bp_insertion frameshift_variant 63 A13,A15,A16,A20,A6,A8,B105,B110,B111,B114,B117,B120,B125,B130,B134,B135,B28,B29,B3,B31,B44,B45,B58,B67,B74,B79,B81,B84,B88,B91,B93,B98,B99,C1,C13,C16,C17,C21,C30,C36,C37,C38,C42,C47,C5,C50,C51,C54,C70,C71,C72,C76,C77,C79,C80,C81,C83,C84,C86,C87,D11,D5,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057772834.1
159 aa
N
1
80
159
Hpt
C
PF01627 Hpt 47-130 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057772834.1 Pfam PF01627 Hpt Domain 47 130 2e-07 31.9 Hpt domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057916851.1
AAATATTTGTGACATTTGGAGCGGCAGCCTTTAAATTGTGATGGCATCGCGTCTTCCTTCATTTGAAATTTAGAAGCAAACAACAATTAATGCAGTGAGTTGCTCTTCCCATTCTCTTCTTTCACAAGACAAAACGGGTCTACCTCTCTGGATGTTGGGACTCAGTGTAGAGCAGCTGCGTGCTGACATGAATCGTCTGCTCGCCATTCTTTTCCACCAGGGAGTATTGGACGAGCAGTTCTTACAGCTGCAGCAACTGC...

CDS

1 records

下载 CDS FASTA
LOC130992286
ATGTTGGGACTCAGTGTAGAGCAGCTGCGTGCTGACATGAATCGTCTGCTCGCCATTCTTTTCCACCAGGGAGTATTGGACGAGCAGTTCTTACAGCTGCAGCAACTGCAAGATGAATCTTCCCCAAACTTTGTGTCTGAGGTTGTCAACATATACTTCCACGAGTCCGAGAAGCTCCTCAGGAACCTCAGAGGATTGCTGGTGGATAAGGAGTTATGTGACTACAAGAAGATGGGAATCCACTTGAATCAATTCATGGG...

Protein

1 records

下载 Protein FASTA
XP_057772834.1
MLGLSVEQLRADMNRLLAILFHQGVLDEQFLQLQQLQDESSPNFVSEVVNIYFHESEKLLRNLRGLLVDKELCDYKKMGIHLNQFMGSSSSIGAQRLRNVCIAFRAASEQNNRPGCLRALELLEYEYCYLKNKLHELFQIEQQRILAGAVRYPAPEQHP

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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