当前解析结果
SmilChr07G001111| 统一新 Gene ID | SmilChr07G001111 |
|---|---|
| 名称 | SmilChr07G001111 |
| 描述 | pseudo histidine-containing phosphotransfer protein 6 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 8207948 - 8209238 / + |
| NCBI Gene ID | LOC130992286 |
|---|---|
| GeneID | 130992286 |
| locus_tag | - |
| NCBI Name | LOC130992286 |
| 原始查询 | LOC130992286 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pseudo histidine-containing phosphotransfer protein 6 |
| 产物 | pseudo histidine-containing phosphotransfer protein 6 |
| Arabidopsis | AT1G80100 (HP6)histidine phosphotransfer protein 6 [Source:NCBI gene (formerly Entrezgene);Acc:844350] identity=76.5; qcov=0.962; evalue=4.36e-66; confidence=high |
| Rice | Os01g0743800 (OsPHP1)- identity=40; qcov=0.943; evalue=4.77e-34; confidence=medium |
| GO | GO:0000160 (phosphorelay signal transduction system); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0009736 (cytokinin-activated signaling pathway); GO:0009927 (histidine phosphotransfer kinase activity); GO:0016310 (phosphorylation); GO:0043424 (protein histidine kinase binding) |
| KEGG | smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01627 (Hpt) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992286 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057772834.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057772834.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057772834.1 |
| 4 | Cytoplasmic vesicle | 细胞质囊泡 | 0.20000 | XP_057772834.1 |
| 5 | Acrosome | Acrosome | 0.20000 | XP_057772834.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:8208152 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B112,B78,C4 |
Chr7:8208258 |
C |
T |
EMS_canonical_SNV | stop_gained | 28 | B104,B105,B112,B121,B125,B2,B22,B25,B34,B6,B67,B72,B81,B93,C11,C29,C31,C33,C36,C40,C46,C47,C51,C53,C65,C69,C70,C73 |
Chr7:8208308 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:8208314 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B83 |
Chr7:8208336 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B136,B55,C14,C23 |
Chr7:8208342 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B106,C80,D5 |
Chr7:8208361 |
TC |
T |
1bp_deletion | frameshift_variant | 2 | B100,B140 |
Chr7:8208361 |
TC |
T |
1bp_deletion | CDS_variant | 2 | B100,B140 |
Chr7:8208460 |
T |
TG |
1bp_insertion | frameshift_variant | 66 | A1,A13,A15,A16,A20,A6,A8,B105,B110,B111,B114,B117,B120,B134,B135,B14,B28,B29,B3,B30,B31,B35,B41,B44,B51,B58,B67,B73,B79,B8,B84,B91,B98,B99,C1,C11,C13,C16,C21,C30,C32,C36,C37,C47,C5,C50,C51,C54,C68,C69,C70,C71,C72,C76,C77,C80,C81,C83,C84,C87,C9,D1,D11,D3,D5,D9 |
Chr7:8208474 |
ACT |
A |
2bp_deletion | frameshift_variant | 14 | A1,A20,B30,B35,B41,B51,B8,C32,C68,C69,C76,C9,D1,D3 |
Chr7:8208477 |
A |
AT |
1bp_insertion | frameshift_variant | 66 | A13,A15,A16,A20,A6,A8,B105,B110,B111,B114,B117,B120,B125,B130,B134,B135,B14,B28,B29,B3,B31,B44,B45,B58,B67,B74,B79,B81,B84,B88,B91,B93,B98,B99,C1,C13,C16,C17,C21,C30,C36,C37,C38,C42,C47,C5,C50,C51,C54,C69,C70,C71,C72,C76,C77,C79,C80,C81,C83,C84,C86,C87,C9,D11,D5,D9 |
Chr7:8208480 |
A |
AT |
1bp_insertion | frameshift_variant | 63 | A13,A15,A16,A20,A6,A8,B105,B110,B111,B114,B117,B120,B125,B130,B134,B135,B28,B29,B3,B31,B44,B45,B58,B67,B74,B79,B81,B84,B88,B91,B93,B98,B99,C1,C13,C16,C17,C21,C30,C36,C37,C38,C42,C47,C5,C50,C51,C54,C70,C71,C72,C76,C77,C79,C80,C81,C83,C84,C86,C87,D11,D5,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057772834.1PF01627
Hpt 47-130 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772834.1 |
Pfam | PF01627 |
Hpt | Domain | 47 | 130 | 2e-07 | 31.9 | Hpt domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。