当前解析结果
SmilChr07G001163| 统一新 Gene ID | SmilChr07G001163 |
|---|---|
| 名称 | SmilChr07G001163 |
| 描述 | uncharacterized SmilChr07G001163 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 8707822 - 8710595 / - |
| NCBI Gene ID | LOC130992338 |
|---|---|
| GeneID | 130992338 |
| locus_tag | - |
| NCBI Name | LOC130992338 |
| 原始查询 | LOC130992338 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNA-directed RNA polymerase III subunit [Source:NCBI gene (formerly Entrezgene);Acc:828101]; symbol=AT4G01590; hit=AT4G01590; species=arabidopsis; confidence=low |
| 产物 | DNA-directed RNA polymerase III subunit [Source:NCBI gene (formerly Entrezgene);Acc:828101]; symbol=AT4G01590; hit=AT4G01590; species=arabidopsis; confidence=low |
| Arabidopsis | AT4G01590 (AT4G01590)DNA-directed RNA polymerase III subunit [Source:NCBI gene (formerly Entrezgene);Acc:828101] identity=39.7; qcov=0.578; evalue=7.2e-09; confidence=low |
| Rice | -- |
| GO | GO:0005666 (RNA polymerase III complex); GO:0006383 (transcription by RNA polymerase III) |
| KEGG | smil03020 (RNA polymerase - Salvia miltiorrhiza (redroot sage)) |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992338 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057772916.1 |
| 2 | Nucleoplasm | 核质 | 1.00000 | XP_057772916.1 |
| 3 | Chromosome | 染色体 | 0.40000 | XP_057772917.1 |
| 4 | Nuclear body | 核内小体 | 0.20000 | XP_057772916.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057772918.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:8708116 |
CGG |
C |
2bp_deletion | frameshift_variant | 7 | B126,B136,B32,B69,B73,B75,C42 |
Chr7:8708117 |
G |
GGA |
2bp_insertion | frameshift_variant | 19 | A14,A20,A4,B103,B109,B17,B36,B77,C11,C13,C43,C63,C69,C7,C75,C82,C86,D10,D11 |
Chr7:8708197 |
GC |
G |
1bp_deletion | frameshift_variant | 31 | B102,B119,B123,B13,B40,B42,B43,B47,B49,B50,B65,B66,B70,B72,B79,B94,C17,C20,C22,C31,C36,C41,C43,C47,C52,C55,C64,C66,D2,D3,D8 |
Chr7:8709949 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C64 |
Chr7:8709953 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A15,B4,C39 |
Chr7:8710002 |
T |
TTG |
2bp_insertion | frameshift_variant | 1 | A15 |
Chr7:8710002 |
T |
TTG |
2bp_insertion | CDS_variant | 1 | A15 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。