Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001172`

染色体: Chr07 坐标: 8821545-8825580 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001172`
名称	SmilChr07G001172
描述	uncharacterized SmilChr07G001172
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	8821545 - 8825580 / `-`

ID 对照

NCBI Gene ID	`LOC130992347`
GeneID	`130992347`
locus_tag	`-`
NCBI Name	`LOC130992347`
原始查询	`LOC130992347`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838119]; symbol=AT1G15490; hit=AT1G15490; species=arabidopsis; confidence=high
产物	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838119]; symbol=AT1G15490; hit=AT1G15490; species=arabidopsis; confidence=high
Arabidopsis	`AT1G15490` (AT1G15490) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838119] identity=62; qcov=1.04; evalue=0; confidence=high
Rice	`Os01g0647700` - identity=56.2; qcov=1.04; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF00561 (Abhydrolase_1); PF08386 (Abhydrolase_4); PF12697 (Abhydrolase_6)
InterPro	-
eggNOG	-
NR	GeneID:130992347

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057772933.1`
2	Endoplasmic reticulum membrane	内质网膜	0.60000	`XP_057772933.1`
3	Nucleus membrane	核膜	0.20000	`XP_057772932.1`
4	Nucleus	细胞核	0.00000	`XP_057772932.1`
5	Chromosome	染色体	0.00000	`XP_057772932.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:8821897`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B49,B86
`Chr7:8821938`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr7:8822009`	`A`	`AC`	1bp_insertion	frameshift_variant	102	A10,A16,A18,A20,A21,A25,A4,A5,A7,B101,B104,B107,B109,B112,B114,B115,B12,B122,B124,B125,B126,B128,B129,B132,B134,B139,B14,B140,B18,B20,B24,B25,B27,B28,B29,B30,B31,B33,B38,B39,B41,B44,B46,B54,B55,B60,B61,B63,B67,B68,B69,B70,B71,B72,B76,B78,B81,B82,B83,B84,B85,B87,B90,B91,B92,B93,B94,C10,C11,C15,C19,C21,C23,C25,C27,C3,C31,C33,C35,C37,C4,C40,C42,C46,C48,C49,C50,C53,C56,C57,C60,C61,C69,C75,C84,C86,D10,D11,D4,D5,D8,D9
`Chr7:8822670`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C34
`Chr7:8822672`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C81
`Chr7:8823077`	`CA`	`C`	1bp_deletion	frameshift_variant	1	C14
`Chr7:8823077`	`CA`	`C`	1bp_deletion	CDS_variant	1	C14
`Chr7:8823638`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772932.1

540 aa

270

540

Abhydrolase_1

Abhydrolase_6

PF00561 Abhydrolase_1 355-470 aa PF12697 Abhydrolase_6 355-517 aa

XP_057772933.1

632 aa

316

632

Abhydrolase_1

Abhydrolase_6

Abhydrolase_4

PF00561 Abhydrolase_1 355-607 aa PF12697 Abhydrolase_6 355-614 aa PF08386 Abhydrolase_4 564-603 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772932.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	355	470	3.6e-13	50.5	alpha/beta hydrolase fold
`XP_057772932.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	355	517	3.4e-13	51.4	Alpha/beta hydrolase family
`XP_057772933.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	355	607	1.1e-20	75.1	alpha/beta hydrolase fold
`XP_057772933.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	355	614	4.1e-21	77.3	Alpha/beta hydrolase family
`XP_057772933.1`	Pfam	`PF08386`	Abhydrolase_4	Family	564	603	0.00018	22.3	TAP-like protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009091274.1
ACCGTTACACTGCTTGAGTGGCTGTCAGTTGTCACTCTCTCTCTCTCTCACACACACACACACACCCCTTAAAACAACATCAATTTTTAAAAACGAAACACACTGATATGCACTTTCTCTCTCACGCACAGAGACAATCACAAGAATCCGACGACAGAATATTTGAATACAGAAGAAAACGCAGAGAAGATTCAGTCTCCATCTTCTGTCCTTCATTTTCCTGCTTGAACTCTGTGAAAATGAGAATATGAAAAAAATCT...

XR_009091273.1
ACCGTTACACTGCTTGAGTGGCTGTCAGTTGTCACTCTCTCTCTCTCTCACACACACACACACACCCCTTAAAACAACATCAATTTTTAAAAACGAAACACACTGATATGCACTTTCTCTCTCACGCACAGAGACAATCACAAGAATCCGACGACAGAATATTTGAATACAGAAGAAAACGCAGAGAAGATTCAGTCTCCATCTTCTGTCCTTCATTTTCCTGCTTGAACTCTGTGAAAATGAGAATATGAAAAAAATCT...

CDS

2 records

下载 CDS FASTA

LOC130992347
ATGGCGATGAAGGGCGGTTGGTGGCTGGAGAAATTGAGGAGGGGCGTGCGGACGGCGTATTTCGTGGTGGTGATGGTGGCGTCTCTGCTGGCGGTGTCGCTGCCGCTGGTGGTGTCCGTTTGCGACGCCGTTCTGCCTTGTTTGCTGATTCCGAGCTTCACGTGCGTCGGATGTGTTAGTATTAAGGAGCATTTGCAGAGATATGCGTTCAGGAGCTCGCTTGTGGATATTCCTGTTGTTTCCATTGTCAGATCTCTCAT...

Protein

2 records

下载 Protein FASTA

XP_057772932.1
MAMKGGWWLEKLRRGVRTAYFVVVMVASLLAVSLPLVVSVCDAVLPCLLIPSFTCVGCVSIKEHLQRYAFRSSLVDIPVVSIVRSLIILCAYSICDLQALSHGSYLGTVTFCSFISILLLSFKACVFTINSQFEQESSLSRKRLHLKKSWGMPVLFLSSVVFALGHIVVAYHTSCKARRKLMFHRGDLEAVLSCKMIFSTYQKVPRSPTPSAGKSFRSDVETRRKAPGSVRDKGQLPVSLLADVDSLFISCQGLIVHYKL...

XP_057772933.1
MAMKGGWWLEKLRRGVRTAYFVVVMVASLLAVSLPLVVSVCDAVLPCLLIPSFTCVGCVSIKEHLQRYAFRSSLVDIPVVSIVRSLIILCAYSICDLQALSHGSYLGTVTFCSFISILLLSFKACVFTINSQFEQESSLSRKRLHLKKSWGMPVLFLSSVVFALGHIVVAYHTSCKARRKLMFHRGDLEAVLSCKMIFSTYQKVPRSPTPSAGKSFRSDVETRRKAPGSVRDKGQLPVSLLADVDSLFISCQGLIVHYKL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器