当前解析结果
SmilChr07G001207| 统一新 Gene ID | SmilChr07G001207 |
|---|---|
| 名称 | SmilChr07G001207 |
| 描述 | N-terminal acetyltransferase A complex auxiliary subunit NAA15 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 9212514 - 9223588 / - |
| NCBI Gene ID | LOC130992383 |
|---|---|
| GeneID | 130992383 |
| locus_tag | - |
| NCBI Name | LOC130992383 |
| 原始查询 | LOC130992383 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | N-terminal acetyltransferase A complex auxiliary subunit NAA15 |
| 产物 | N-terminal acetyltransferase A complex auxiliary subunit NAA15 |
| Arabidopsis | AT1G80410 (EMB2753)tetratricopeptide repeat (TPR)-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:844381] identity=75.1; qcov=0.996; evalue=0; confidence=high |
| Rice | Os01g0617500 (P0686E09.27-1)- identity=72; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0004596 (protein-N-terminal amino-acid acetyltransferase activity); GO:0005515 (protein binding); GO:0005737 (cytoplasm); GO:0017196 (N-terminal peptidyl-methionine acetylation) |
| KEGG | - |
| Pfam | PF07719 (TPR_2); PF12569 (NatA_aux_su); PF13181 (TPR_8); PF13414 (TPR_11); PF31234 (TPR_Psidin_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992383 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057772972.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057772972.1 |
| 3 | Cytoplasm | 细胞质 | 0.80000 | XP_057772972.1 |
| 4 | Nucleoplasm | 核质 | 0.40000 | XP_057772972.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057772972.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:9213083 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B65,C46,C85 |
Chr7:9213123 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B65,C46,C85 |
Chr7:9213137 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B3,C15,C39,C77 |
Chr7:9214587 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B3,C15,C77 |
Chr7:9215357 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C60,C65 |
Chr7:9215782 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B90,B92 |
Chr7:9216115 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B41,C10,C42 |
Chr7:9216507 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B3,C15,C77 |
Chr7:9216900 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr7:9218214 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C34 |
Chr7:9218251 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A4,B111,C30,C7,C84 |
Chr7:9218252 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B65,C46,C85 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772972.1PF31234
TPR_Psidin_N 19-250 aa
PF07719
TPR_2 79-110 aa
PF13181
TPR_8 80-110 aa
PF13414
TPR_11 84-123 aa
PF12569
NatA_aux_su 187-695 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772972.1 |
Pfam | PF31234 |
TPR_Psidin_N | Repeat | 19 | 250 | 1.5e-13 | 51.5 | Psidin, N-terminal TPR repeats region |
XP_057772972.1 |
Pfam | PF07719 |
TPR_2 | Repeat | 79 | 110 | 1.4e-16 | 59.9 | Tetratricopeptide repeat |
XP_057772972.1 |
Pfam | PF13181 |
TPR_8 | Repeat | 80 | 110 | 1.9e-10 | 40.8 | Tetratricopeptide repeat |
XP_057772972.1 |
Pfam | PF13414 |
TPR_11 | Repeat | 84 | 123 | 3.5e-10 | 40.1 | TPR repeat |
XP_057772972.1 |
Pfam | PF12569 |
NatA_aux_su | Repeat | 187 | 695 | 1.9e-200 | 667.9 | N-terminal acetyltransferase A, auxiliary subunit |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。