当前解析结果
SmilChr07G001249| 统一新 Gene ID | SmilChr07G001249 |
|---|---|
| 名称 | SmilChr07G001249 |
| 描述 | purine permease 3-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 9603929 - 9632230 / - |
| NCBI Gene ID | LOC130992424 |
|---|---|
| GeneID | 130992424 |
| locus_tag | - |
| NCBI Name | LOC130992424 |
| 原始查询 | LOC130992424 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | purine permease 3-like |
| 产物 | purine permease 3-like |
| Arabidopsis | AT1G28220 (PUP3)purine permease 3 [Source:NCBI gene (formerly Entrezgene);Acc:839716] identity=59.7; qcov=0.912; evalue=4.01e-148; confidence=high |
| Rice | Os09g0467400 (OsPUP3)- identity=60.1; qcov=0.887; evalue=7.59e-135; confidence=high |
| GO | GO:0015211 (purine nucleoside transmembrane transporter activity); GO:0016020 (membrane) |
| KEGG | - |
| Pfam | PF00892 (EamA); PF16913 (PUNUT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992424 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057773031.1 |
| 2 | Vacuole | 液泡 | 0.40000 | XP_057773031.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057773031.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057773031.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057773031.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:9604054 |
C |
CA |
1bp_insertion | frameshift_variant | 1 | B8 |
Chr7:9604054 |
C |
CA |
1bp_insertion | CDS_variant | 1 | B8 |
Chr7:9604379 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C15,C76 |
Chr7:9604386 |
G |
GTA |
2bp_insertion | frameshift_variant | 1 | C15 |
Chr7:9604386 |
G |
GTA |
2bp_insertion | CDS_variant | 1 | C15 |
Chr7:9604407 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
Chr7:9631466 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B9,C75 |
Chr7:9631610 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr7:9631929 |
CCG |
C |
2bp_deletion | frameshift_variant | 1 | A8 |
Chr7:9631929 |
CCG |
C |
2bp_deletion | CDS_variant | 1 | A8 |
Chr7:9631932 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057773031.1PF16913
PUNUT 16-333 aa
PF00892
EamA 63-156 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773031.1 |
Pfam | PF16913 |
PUNUT | Family | 16 | 333 | 3.5e-114 | 382.1 | Purine nucleobase transmembrane transport |
XP_057773031.1 |
Pfam | PF00892 |
EamA | Domain | 63 | 156 | 4.7e-07 | 30.9 | EamA-like transporter family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。