Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G001265

染色体: Chr07 坐标: 9712119-9716549 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G001265
名称SmilChr07G001265
描述kinesin-like protein KIN-13B
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向9712119 - 9716549 / -

ID 对照

NCBI Gene IDLOC130992433
GeneID130992433
locus_tag-
NCBI NameLOC130992433
原始查询LOC130992433

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述kinesin-like protein KIN-13B
产物kinesin-like protein KIN-13B
ArabidopsisAT3G16060 (AT3G16060)
ATP binding microtubule motor family protein [Source:NCBI gene (formerly Entrezgene);Acc:820851]
identity=67.7; qcov=0.994; evalue=0; confidence=high
RiceOs05g0154700 (SRS3)
-
identity=64; qcov=0.663; evalue=0; confidence=high
GOGO:0003777 (microtubule motor activity); GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0008017 (microtubule binding)
KEGGsmil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage))
PfamPF00225 (Kinesin); PF16796 (Microtub_bd)
InterPro-
eggNOG-
NRGeneID:130992433

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoskeleton 细胞骨架 1.00000 XP_057773041.1
2 Phragmoplast Phragmoplast 0.60000 XP_057773041.1
3 Spindle Spindle 0.40000 XP_057773041.1
4 Chromosome 染色体 0.20000 XP_057773041.1
5 Spindle pole Spindle pole 0.20000 XP_057773041.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:9712224 G A EMS_canonical_SNV CDS_variant 3 B117,B123,B131
Chr7:9712392 C T EMS_canonical_SNV CDS_variant 3 B117,B123,B131
Chr7:9712776 C T EMS_canonical_SNV CDS_variant 3 B117,B123,B131
Chr7:9712836 G A EMS_canonical_SNV CDS_variant 1 B44
Chr7:9712882 G A EMS_canonical_SNV CDS_variant 2 B44,C35
Chr7:9712890 C T EMS_canonical_SNV CDS_variant 3 A19,C52,C65
Chr7:9713698 TTC T 2bp_deletion frameshift_variant 1 B35
Chr7:9713698 TTC T 2bp_deletion CDS_variant 1 B35
Chr7:9713724 C T EMS_canonical_SNV CDS_variant 1 D11
Chr7:9713935 C T EMS_canonical_SNV CDS_variant 2 B104,D11
Chr7:9714219 C T EMS_canonical_SNV CDS_variant 3 B117,B123,B131
Chr7:9714365 G A EMS_canonical_SNV CDS_variant 3 B53,B77,C62

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057773041.1
700 aa
N
1
350
700
Microtub_bd
Kinesin
C
PF16796 Microtub_bd 185-326 aa PF00225 Kinesin 191-507 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057773041.1 Pfam PF16796 Microtub_bd Domain 185 326 2.2e-15 57.6 Microtubule binding
XP_057773041.1 Pfam PF00225 Kinesin Domain 191 507 3.4e-100 335.9 Kinesin motor domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057917058.1
CCGTCACCACCAAGAAATTCAAAAATTTCTGAGTGTCTTTGTCACTTTCGCTTCAGCATTCTTCAGTAAATGTAAAGTGAAAGTGAAGATAAAATCACAGCCGTTCAAATTTAAAGGCTTCTCAGACCAAGTCTTCGGCATTTCGTCATCAATATTCAATTTTCTCTGTGTATAGACACATCATACATTGCCGGTGAAAGAGGGTTTTTGTTTTCATTTCCAGATTATTACTATATTATTTTAATTCTGACCGGAGAAGA...

CDS

1 records

下载 CDS FASTA
LOC130992433
ATGAACCCGGTGGGGCGGCAGAGGTCCGAAGCGCCGGCGGCGCACCATCAGCGGCAGCACTCCGACAATTTTCTGGAAACTTCGTCGAACGGCCGGTGGCTGCAATCGGCTGGTCTGCAGTACTTACAGTCATCAAACAATGCGGCTCCTCCAGTTCAGGATTTAGGGTGCTATAATGGAGGGGGTCAGGGTACAAGTATGTATAGGAGTTTGCAGGGACAGAGAAGTTATAGTGGCAGTGACTTGTTCGCGGAGCCATT...

Protein

1 records

下载 Protein FASTA
XP_057773041.1
MNPVGRQRSEAPAAHHQRQHSDNFLETSSNGRWLQSAGLQYLQSSNNAAPPVQDLGCYNGGGQGTSMYRSLQGQRSYSGSDLFAEPLTPPGNPGRKTVEEQASPNEYSPGLLDLNSFDTELLSTVSVPGLYDGPSVNLFARGRSFDDSDPYVGNYKQAGRTCVLPDGNVLKSIAADNVKASTVAKIKVVVRKRPLNKKELAKNEEDIIETYSNSLVVHETKLKVDLTEYEEKHEFVFDAVLNEEISNDEVYRETVEPIVP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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