当前解析结果
SmilChr07G001269| 统一新 Gene ID | SmilChr07G001269 |
|---|---|
| 名称 | SmilChr07G001269 |
| 描述 | uncharacterized SmilChr07G001269 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 9751036 - 9757882 / - |
| NCBI Gene ID | LOC130992440 |
|---|---|
| GeneID | 130992440 |
| locus_tag | - |
| NCBI Name | LOC130992440 |
| 原始查询 | LOC130992440 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RAD3-like DNA-binding helicase protein [Source:NCBI gene (formerly Entrezgene);Acc:844328]; symbol=AT1G79890; hit=AT1G79890; species=arabidopsis; confidence=high |
| 产物 | RAD3-like DNA-binding helicase protein [Source:NCBI gene (formerly Entrezgene);Acc:844328]; symbol=AT1G79890; hit=AT1G79890; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G79890 (AT1G79890)RAD3-like DNA-binding helicase protein [Source:NCBI gene (formerly Entrezgene);Acc:844328] identity=57.6; qcov=0.99; evalue=0; confidence=high |
| Rice | Os05g0219800- identity=52.7; qcov=0.987; evalue=0; confidence=high |
| GO | GO:0003677 (DNA binding); GO:0003678 (DNA helicase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0006139 (nucleobase-containing compound metabolic process); GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides); GO:0032508 (GO:0032508); GO:0034085 (establishment of sister chromatid cohesion) |
| KEGG | - |
| Pfam | PF06733 (DEAD_2); PF13307 (Helicase_C_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992440 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057773049.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057773049.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057773049.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057773049.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057773049.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:9751755 |
T |
TA |
1bp_insertion | frameshift_variant | 65 | A1,A11,A21,A23,A9,B105,B109,B110,B117,B120,B121,B124,B128,B132,B135,B137,B15,B25,B27,B33,B35,B37,B4,B40,B45,B51,B52,B57,B58,B67,B68,B72,B74,B77,B84,B85,B9,B90,B91,B92,B94,B99,C19,C20,C21,C25,C27,C30,C31,C33,C34,C38,C4,C43,C49,C51,C52,C56,C57,C63,C64,C65,C66,C9,D8 |
Chr7:9754173 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B140,B22,C8 |
Chr7:9754432 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B72,B90,B92,C21,C25 |
Chr7:9754531 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B117,B131 |
Chr7:9755142 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr7:9755214 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A13,C31,D7 |
Chr7:9755431 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
Chr7:9755638 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C32 |
Chr7:9756079 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A13,C31,D7 |
Chr7:9756665 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
Chr7:9756863 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B41,C10,C42 |
Chr7:9756929 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057773049.1PF06733
DEAD_2 209-396 aa
PF13307
Helicase_C_2 648-847 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773049.1 |
Pfam | PF06733 |
DEAD_2 | Family | 209 | 396 | 9.2e-53 | 179.1 | DEAD_2 |
XP_057773049.1 |
Pfam | PF13307 |
Helicase_C_2 | Domain | 648 | 847 | 6.2e-45 | 154.0 | Helicase C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。