当前解析结果
SmilChr07G001281| 统一新 Gene ID | SmilChr07G001281 |
|---|---|
| 名称 | SmilChr07G001281 |
| 描述 | wall-associated receptor kinase-like 1 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 9847514 - 9851163 / - |
| NCBI Gene ID | LOC130992449 |
|---|---|
| GeneID | 130992449 |
| locus_tag | - |
| NCBI Name | LOC130992449 |
| 原始查询 | LOC130992449 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | wall-associated receptor kinase-like 1 |
| 产物 | wall-associated receptor kinase-like 1 |
| Arabidopsis | AT1G69730 (AT1G69730)Wall-associated kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:843309] identity=39; qcov=1.04; evalue=1.41e-161; confidence=medium |
| Rice | Os04g0599000 (OsWAK53)- identity=43.3; qcov=0.927; evalue=1.19e-167; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005509 (calcium ion binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0007166 (cell surface receptor signaling pathway); GO:0030247 (polysaccharide binding) |
| KEGG | - |
| Pfam | PF00008 (EGF); PF00069 (Pkinase); PF07645 (EGF_CA); PF07714 (PK_Tyr_Ser-Thr); PF13947 (GUB_WAK_bind) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992449 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057773069.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057773069.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057773069.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057773069.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057773069.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:9848046 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr7:9848393 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
Chr7:9848413 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:9848467 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B1,B15 |
Chr7:9848473 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B117,B131 |
Chr7:9848502 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C60 |
Chr7:9848502 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C60 |
Chr7:9848535 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr7:9848614 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr7:9848784 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | C51,D1 |
Chr7:9848784 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C51,D1 |
Chr7:9849587 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B121 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057773069.1PF13947
GUB_WAK_bind 32-91 aa
PF07645
EGF_CA 262-290 aa
PF07645
EGF_CA 300-334 aa
PF00008
EGF 304-330 aa
PF00069
Pkinase 426-700 aa
PF07714
PK_Tyr_Ser-Thr 429-703 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773069.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 32 | 91 | 2.1e-13 | 51.2 | Wall-associated receptor kinase galacturonan-binding |
XP_057773069.1 |
Pfam | PF07645 |
EGF_CA | Domain | 262 | 290 | 3.9e-11 | 43.7 | Calcium-binding EGF domain |
XP_057773069.1 |
Pfam | PF07645 |
EGF_CA | Domain | 300 | 334 | 3.9e-11 | 43.7 | Calcium-binding EGF domain |
XP_057773069.1 |
Pfam | PF00008 |
EGF | Domain | 304 | 330 | 3.3e-09 | 37.5 | EGF-like domain |
XP_057773069.1 |
Pfam | PF00069 |
Pkinase | Domain | 426 | 700 | 4.4e-49 | 168.0 | Protein kinase domain |
XP_057773069.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 429 | 703 | 4.3e-47 | 161.3 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。