Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001304`

染色体: Chr07 坐标: 10019030-10024293 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001304`
名称	SmilChr07G001304
描述	probable CoA ligase CCL8
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	10019030 - 10024293 / `-`

ID 对照

NCBI Gene ID	`LOC130992468`
GeneID	`130992468`
locus_tag	`-`
NCBI Name	`LOC130992468`
原始查询	`LOC130992468`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable CoA ligase CCL8
产物	probable CoA ligase CCL8
Arabidopsis	`AT3G16170` (AAE13) AMP-dependent synthetase and ligase family protein [Source:NCBI gene (formerly Entrezgene);Acc:820862] identity=68.5; qcov=1.02; evalue=0; confidence=high
Rice	`Os01g0761300` - identity=74.3; qcov=0.629; evalue=0; confidence=high
GO	GO:0006631 (fatty acid metabolic process); GO:0031956 (medium-chain fatty acid-CoA ligase activity)
KEGG	smil00061 (Fatty acid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00280 (Valine, leucine and isoleucine degradation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF00501 (AMP-binding); PF13193 (AMP-binding_C)
InterPro	-
eggNOG	-
NR	GeneID:130992468

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057773092.1`
2	Mitochondrion matrix	线粒体基质	1.00000	`XP_057773092.1`
3	Peroxisome	过氧化物酶体	1.00000	`XP_057773093.1`
4	Nucleus	细胞核	0.00000	`XP_057773092.1`
5	Chromosome	染色体	0.00000	`XP_057773092.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:10019849`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:10020940`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr7:10021143`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D10,D11
`Chr7:10021266`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C42
`Chr7:10021302`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B107,B5,B76
`Chr7:10022092`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:10022198`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A11,B136,B38,B39,B91
`Chr7:10022265`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B117
`Chr7:10022624`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C76
`Chr7:10022646`	`GC`	`G`	1bp_deletion	frameshift_variant	1	D11
`Chr7:10022646`	`GC`	`G`	1bp_deletion	CDS_variant	1	D11
`Chr7:10024122`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C73

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773092.1

595 aa

298

595

AMP-binding

AMP-binding_C

PF00501 AMP-binding 68-444 aa PF13193 AMP-binding_C 496-581 aa

XP_057773093.1

537 aa

268

537

AMP-binding

AMP-binding_C

PF00501 AMP-binding 10-386 aa PF13193 AMP-binding_C 438-523 aa

XP_057773094.1

537 aa

268

537

AMP-binding

AMP-binding_C

PF00501 AMP-binding 10-386 aa PF13193 AMP-binding_C 438-523 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773092.1`	Pfam	`PF00501`	AMP-binding	Family	68	444	2.4e-74	251.2	AMP-binding enzyme
`XP_057773092.1`	Pfam	`PF13193`	AMP-binding_C	Domain	496	581	6.8e-16	59.7	AMP-binding enzyme C-terminal domain
`XP_057773093.1`	Pfam	`PF00501`	AMP-binding	Family	10	386	1.7e-74	251.6	AMP-binding enzyme
`XP_057773093.1`	Pfam	`PF13193`	AMP-binding_C	Domain	438	523	5.9e-16	59.9	AMP-binding enzyme C-terminal domain
`XP_057773094.1`	Pfam	`PF00501`	AMP-binding	Family	10	386	1.7e-74	251.6	AMP-binding enzyme
`XP_057773094.1`	Pfam	`PF13193`	AMP-binding_C	Domain	438	523	5.9e-16	59.9	AMP-binding enzyme C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057917109.1
CTCATTTTCAAAAACGCAAGCTTTCCCCCTTCACGAAATCAAGGAACCGTCACCAAAGATTCAAGATTGAAGAAGCCCATGTAGCCGTCGGCAAGAATGGAGTGGGACGCCATGTACTATTAAAATACTTAAATGATATTTTCCTTAATATTCAGACCACCTAATTAGATGGGCGTATTTAAGACAACCAACCACATGGTCCGATTGAGCGCCAGCTCTTGCCCTTGCTCTGCCTATTCACCTGTCCGATTTTTGCATTC...

XM_057917110.1
GCTCTTGCCCTTGCTCTGCCTATTCACCTGTCCGATTTTTGCATTCTTTGACTTCTTTTCCTCTTAAAGTTTCAAACTTTTCCTCTCAGGCTCGCTTGCTTTCTTCTGCCCTTTTTGTGTCGTGGGATTTTGTTTCTCTGGTTGAGGGAGTTGAGATAGGTGCTGCTTGGAGTTGCAAGGGATTTCAGATATAGATACACGTAATAGTATAGTCATGGAGCTGGTCAAGAAAGTTGCCCATAGAGGATCTACAGCTCCAG...

CDS

3 records

下载 CDS FASTA

LOC130992468
ATGGGCGTATTTAAGACAACCAACCACATGGTCCGATTGAGCGCCAGCTCTTGCCCTTGCTCTGCCTATTCACCTGTCCGATTTTTGCATTCTTTGACTTCTTTTCCTCTTAAAGTTTCAAACTTTTCCTCTCAGGCTCGCTTGCTTTCTTCTGATACACGTAATAGTATAGTCATGGAGCTGGTCAAGAAAGTTGCCCATAGAGGATCTACAGCTCCAGATAGTATTGCAATAAGATCTGATCAAAAAAGCCATACTTA...

LOC130992468
ATGGAGCTGGTCAAGAAAGTTGCCCATAGAGGATCTACAGCTCCAGATAGTATTGCAATAAGATCTGATCAAAAAAGCCATACTTATCATCAGCTGGTTGAATCTGCTAAGAACATATCTAACTTGTTATCCAGTGCTGATTTAAAAACTGTCAATAGCCCTGGGAAAAACAACCATTTTGCTGGAGCTAGGGTTGGAATTGTTGCTAAACCTTCTCCCGAGTTTGTTGCTGGAGTGCTTGGAACATGGTTCAGTGGAGG...

Protein

3 records

下载 Protein FASTA

XP_057773092.1
MGVFKTTNHMVRLSASSCPCSAYSPVRFLHSLTSFPLKVSNFSSQARLLSSDTRNSIVMELVKKVAHRGSTAPDSIAIRSDQKSHTYHQLVESAKNISNLLSSADLKTVNSPGKNNHFAGARVGIVAKPSPEFVAGVLGTWFSGGVAVPLALSYPEAELLHVMNDADITMILSTEDHHELMKAVAAKTSSQLSLLPPVSSTGVDRTNSQETEVSQAISGDDPALIIYTSGTTGKPKGVVHTHEGILAQVQMLSDAWGYTS...

XP_057773093.1
MELVKKVAHRGSTAPDSIAIRSDQKSHTYHQLVESAKNISNLLSSADLKTVNSPGKNNHFAGARVGIVAKPSPEFVAGVLGTWFSGGVAVPLALSYPEAELLHVMNDADITMILSTEDHHELMKAVAAKTSSQLSLLPPVSSTGVDRTNSQETEVSQAISGDDPALIIYTSGTTGKPKGVVHTHEGILAQVQMLSDAWGYTSDDQFLHCLPLHHVHGLFNALLAPLYAGSLVEFMPKFSVRGIWQRWRESHLDDQTKAEG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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