当前解析结果
SmilChr07G001307| 统一新 Gene ID | SmilChr07G001307 |
|---|---|
| 名称 | SmilChr07G001307 |
| 描述 | probable plastidic glucose transporter 2 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 10035001 - 10039819 / - |
| NCBI Gene ID | LOC130992472 |
|---|---|
| GeneID | 130992472 |
| locus_tag | - |
| NCBI Name | LOC130992472 |
| 原始查询 | LOC130992472 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable plastidic glucose transporter 2 |
| 产物 | probable plastidic glucose transporter 2 |
| Arabidopsis | AT1G79820 (SGB1)Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844321] identity=66.7; qcov=0.996; evalue=0; confidence=high |
| Rice | Os02g0274900 (P0413A11.38-1)- identity=66.1; qcov=0.971; evalue=0; confidence=high |
| GO | GO:0015149 (hexose transmembrane transporter activity); GO:0015749 (monosaccharide transmembrane transport); GO:0016020 (membrane) |
| KEGG | - |
| Pfam | PF00083 (Sugar_tr); PF07690 (MFS_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992472 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 1.00000 | XP_057773103.1 |
| 2 | Vacuole membrane | 液泡膜 | 1.00000 | XP_057773103.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057773103.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057773103.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057773103.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:10035754 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:10035764 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
Chr7:10035988 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:10036823 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B117,C2 |
Chr7:10038374 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057773103.1PF00083
Sugar_tr 52-483 aa
PF07690
MFS_1 57-398 aa
XP_057773104.1PF00083
Sugar_tr 52-483 aa
PF07690
MFS_1 57-398 aa
XP_057773105.1PF00083
Sugar_tr 52-483 aa
PF07690
MFS_1 57-398 aa
XP_057773106.1PF00083
Sugar_tr 52-483 aa
PF07690
MFS_1 57-398 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773103.1 |
Pfam | PF00083 |
Sugar_tr | Family | 52 | 483 | 4e-93 | 313.5 | Sugar (and other) transporter |
XP_057773103.1 |
Pfam | PF07690 |
MFS_1 | Family | 57 | 398 | 1.3e-24 | 87.6 | Major Facilitator Superfamily |
XP_057773104.1 |
Pfam | PF00083 |
Sugar_tr | Family | 52 | 483 | 4e-93 | 313.5 | Sugar (and other) transporter |
XP_057773104.1 |
Pfam | PF07690 |
MFS_1 | Family | 57 | 398 | 1.3e-24 | 87.6 | Major Facilitator Superfamily |
XP_057773105.1 |
Pfam | PF00083 |
Sugar_tr | Family | 52 | 483 | 4e-93 | 313.5 | Sugar (and other) transporter |
XP_057773105.1 |
Pfam | PF07690 |
MFS_1 | Family | 57 | 398 | 1.3e-24 | 87.6 | Major Facilitator Superfamily |
XP_057773106.1 |
Pfam | PF00083 |
Sugar_tr | Family | 52 | 483 | 5.4e-93 | 313.0 | Sugar (and other) transporter |
XP_057773106.1 |
Pfam | PF07690 |
MFS_1 | Family | 57 | 398 | 8.1e-25 | 88.2 | Major Facilitator Superfamily |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。