Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001355`

染色体: Chr07 坐标: 10506820-10510239 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001355`
名称	SmilChr07G001355
描述	protein IQ-domain 26-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	10506820 - 10510239 / `+`

ID 对照

NCBI Gene ID	`LOC130992519`
GeneID	`130992519`
locus_tag	`-`
NCBI Name	`LOC130992519`
原始查询	`LOC130992519`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein IQ-domain 26-like
产物	protein IQ-domain 26-like
Arabidopsis	`AT3G16490` (IQD26) IQ-domain 26 [Source:NCBI gene (formerly Entrezgene);Acc:820897] identity=52; qcov=1.01; evalue=5.07e-108; confidence=high
Rice	`Os05g0187500` (GW5) - identity=42.7; qcov=1.15; evalue=1.39e-78; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00612 (IQ); PF13178 (DUF4005)
InterPro	-
eggNOG	-
NR	GeneID:130992519

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057773164.1`
2	Nucleus	细胞核	0.60000	`XP_057773161.1`
3	Cytoskeleton	细胞骨架	0.60000	`XP_057773161.1`
4	Nucleus membrane	核膜	0.20000	`XP_057773161.1`
5	Chromosome	染色体	0.00000	`XP_057773161.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:10509263`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr7:10509265`	`C`	`CT`	1bp_insertion	frameshift_variant	1	B64
`Chr7:10509265`	`C`	`CT`	1bp_insertion	CDS_variant	1	B64
`Chr7:10509266`	`CGG`	`C`	2bp_deletion	frameshift_variant	1	B64
`Chr7:10509266`	`CGG`	`C`	2bp_deletion	CDS_variant	1	B64
`Chr7:10509446`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B33,B44
`Chr7:10509468`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:10509498`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B90,C21
`Chr7:10509670`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr7:10509882`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B134,B53,C14,C73

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773161.1

415 aa

208

415

DUF4005

PF00612 IQ 137-155 aa PF00612 IQ 161-175 aa PF13178 DUF4005 332-401 aa

XP_057773162.1

401 aa

200

401

DUF4005

PF00612 IQ 123-141 aa PF00612 IQ 147-161 aa PF13178 DUF4005 318-387 aa

XP_057773163.1

401 aa

200

401

DUF4005

PF00612 IQ 123-141 aa PF00612 IQ 147-161 aa PF13178 DUF4005 318-387 aa

XP_057773164.1

396 aa

198

396

DUF4005

PF00612 IQ 118-136 aa PF00612 IQ 142-156 aa PF13178 DUF4005 313-382 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773161.1`	Pfam	`PF00612`	IQ	Motif	137	155	1.1e-08	34.9	IQ calmodulin-binding motif
`XP_057773161.1`	Pfam	`PF00612`	IQ	Motif	161	175	1.1e-08	34.9	IQ calmodulin-binding motif
`XP_057773161.1`	Pfam	`PF13178`	DUF4005	Family	332	401	1.2e-11	45.8	Protein of unknown function (DUF4005)
`XP_057773162.1`	Pfam	`PF00612`	IQ	Motif	123	141	9.1e-09	35.1	IQ calmodulin-binding motif
`XP_057773162.1`	Pfam	`PF00612`	IQ	Motif	147	161	9.1e-09	35.1	IQ calmodulin-binding motif
`XP_057773162.1`	Pfam	`PF13178`	DUF4005	Family	318	387	1.1e-11	45.9	Protein of unknown function (DUF4005)
`XP_057773163.1`	Pfam	`PF00612`	IQ	Motif	123	141	9.1e-09	35.1	IQ calmodulin-binding motif
`XP_057773163.1`	Pfam	`PF00612`	IQ	Motif	147	161	9.1e-09	35.1	IQ calmodulin-binding motif
`XP_057773163.1`	Pfam	`PF13178`	DUF4005	Family	318	387	1.1e-11	45.9	Protein of unknown function (DUF4005)
`XP_057773164.1`	Pfam	`PF00612`	IQ	Motif	118	136	9.6e-09	35.0	IQ calmodulin-binding motif
`XP_057773164.1`	Pfam	`PF00612`	IQ	Motif	142	156	9.6e-09	35.0	IQ calmodulin-binding motif
`XP_057773164.1`	Pfam	`PF13178`	DUF4005	Family	313	382	1.1e-11	45.9	Protein of unknown function (DUF4005)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057917180.1
AATACTGATTTTCTGCACTACAAAAAGGCAGAGATTCCTCCCCAAATCAACCAAAATAATACCAATAAAATTAAAAAAAAAAAAAAAAAAACCCGCTGAATATCGCCCATAACTCGTCCCCTTCAGCAAGAAGCAGCCATCAAGATTTCACTGCTTTAATTTGCTAAAAAAGAAAAAAGAAAAAATGGGGAAAGCTACAAAGTGGTTGAAGGGCTTGCTTGGGATGAAGAAAGATAAAGAAAACGTGGAAAGCAATTCAA...

XM_057917179.1
ATTTGCGCCCTTTAAAAGCTTCGGAGAAAAGGCTACATAAAAGTTGAAAGTGATATGGGATGAGGGCACTGAGAGTTTTGTACAGATTCAACCAATTATAGAGATTTTTTTAATGGTTTCTGTAGACTTAACATTAAAAAGGGCCTGTGCATATATTAATGATAGTTTATAAAGATCAACAATATAAGAGCCGTGTATTTTCTCTCATATATTGCGCACGTTGCTCCATGAAGCTTGAGAGAGAGAGATAGAGGAGAGAG...

CDS

4 records

下载 CDS FASTA

LOC130992519
ATGAACATGAGCTTCCCATTGCTAAAAAAGAAAAAAGAAAAAATGGGGAAAGCTACAAAGTGGTTGAAGGGCTTGCTTGGGATGAAGAAAGATAAAGAAAACGTGGAAAGCAATTCAAATTGCGGCGATAATAAGAGAGAGAAGAAGCGGTGGAGCTTTGCCAAGTCCGGCAAGGATTCCGGCGGATTTAATCAGATTCCGGTGGATATTCCGGCGGCCGATTCGGCTTGGTTGAGATCCTACATTGGTGGCACGGACAA...

Protein

4 records

下载 Protein FASTA

XP_057773161.1
MNMSFPLLKKKKEKMGKATKWLKGLLGMKKDKENVESNSNCGDNKREKKRWSFAKSGKDSGGFNQIPVDIPAADSAWLRSYIGGTDKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGKGGLYTGGRERLAAVKIQTVFRGFLARKALRALKGLVKLQALVRGYLVRKRAAATLHSMQALFRAQAAVRSQRARRSISNDYRYQLETRGRKPVDRFDENRSEFHSKRVVSTSCDPSVNTFDESPKIVEIDTCGPK...

XP_057773162.1
MGKATKWLKGLLGMKKDKENVESNSNCGDNKREKKRWSFAKSGKDSGGFNQIPVDIPAADSAWLRSYIGGTDKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGKGGLYTGGRERLAAVKIQTVFRGFLARKALRALKGLVKLQALVRGYLVRKRAAATLHSMQALFRAQAAVRSQRARRSISNDYRYQLETRGRKPVDRFDENRSEFHSKRVVSTSCDPSVNTFDESPKIVEIDTCGPKSRSRRMNGCMSEYG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器