当前解析结果
SmilChr07G001465| 统一新 Gene ID | SmilChr07G001465 |
|---|---|
| 名称 | SmilChr07G001465 |
| 描述 | kinesin-like protein KIN-12B |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 11490047 - 11497428 / + |
| NCBI Gene ID | LOC130992541 |
|---|---|
| GeneID | 130992541 |
| locus_tag | - |
| NCBI Name | LOC130992541 |
| 原始查询 | LOC130992541 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | kinesin-like protein KIN-12B |
| 产物 | kinesin-like protein KIN-12B |
| Arabidopsis | AT3G23670 (KINESIN-12B)phragmoplast-associated kinesin-related protein [Source:NCBI gene (formerly Entrezgene);Acc:821947] identity=55; qcov=1.09; evalue=0; confidence=high |
| Rice | Os02g0489800 (SIP27)- identity=49.8; qcov=0.454; evalue=4.78e-153; confidence=medium |
| GO | GO:0003777 (microtubule motor activity); GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0008017 (microtubule binding) |
| KEGG | smil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00225 (Kinesin); PF16796 (Microtub_bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992541 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057773195.1 |
| 2 | Phragmoplast | Phragmoplast | 1.00000 | XP_057773195.1 |
| 3 | Spindle | Spindle | 0.80000 | XP_057773195.1 |
| 4 | Spindle pole | Spindle pole | 0.40000 | XP_057773195.1 |
| 5 | Cytosol | 细胞质基质 | 0.40000 | XP_057773195.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:11490222 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A6,B61,B77,C52,C77 |
Chr7:11490854 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:11491073 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A1 |
Chr7:11491154 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B123,B49,B79,C36 |
Chr7:11491279 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr7:11493340 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B3 |
Chr7:11493365 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C3 |
Chr7:11493920 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:11493987 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A13,B22 |
Chr7:11493992 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr7:11494114 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr7:11494484 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A2,B131,B56,B96 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057773195.1PF16796
Microtub_bd 100-243 aa
PF00225
Kinesin 121-431 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773195.1 |
Pfam | PF16796 |
Microtub_bd | Domain | 100 | 243 | 3e-20 | 73.4 | Microtubule binding |
XP_057773195.1 |
Pfam | PF00225 |
Kinesin | Domain | 121 | 431 | 7.8e-110 | 367.6 | Kinesin motor domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。