Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001446`

染色体: Chr07 坐标: 11243921-11249979 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001446`
名称	SmilChr07G001446
描述	uncharacterized SmilChr07G001446
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	11243921 - 11249979 / `+`

ID 对照

NCBI Gene ID	`LOC130992543`
GeneID	`130992543`
locus_tag	`-`
NCBI Name	`LOC130992543`
原始查询	`LOC130992543`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	trafficking protein particle complex subunit-like protein [Source:NCBI gene (formerly Entrezgene);Acc:836725]; symbol=AT5G65950; hit=AT5G65950; species=arabidopsis; confidence=high
产物	trafficking protein particle complex subunit-like protein [Source:NCBI gene (formerly Entrezgene);Acc:836725]; symbol=AT5G65950; hit=AT5G65950; species=arabidopsis; confidence=high
Arabidopsis	`AT5G65950` (AT5G65950) trafficking protein particle complex subunit-like protein [Source:NCBI gene (formerly Entrezgene);Acc:836725] identity=55.7; qcov=1.02; evalue=0; confidence=high
Rice	`Os02g0714500` (OJ1479_B12.25-1) - identity=54.5; qcov=0.602; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF11817 (Foie-gras_1); PF12742 (Gryzun-like); PF28382 (DUF8387); PF29907 (TRAPPC11_N)
InterPro	-
eggNOG	-
NR	GeneID:130992543

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057773198.1`
2	Cytoplasm	细胞质	0.80000	`XP_057773198.1`
3	Golgi apparatus	高尔基体	0.80000	`XP_057773198.1`
4	Trans-golgi network	Trans-golgi network	0.60000	`XP_057773198.1`
5	Vesicle	囊泡	0.60000	`XP_057773198.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:11244096`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B49,B79,B90,C36
`Chr7:11244111`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr7:11244258`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B84,C62
`Chr7:11244395`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr7:11244399`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:11244403`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:11244411`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr7:11244507`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr7:11244546`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:11244550`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:11245701`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B21,C26
`Chr7:11245727`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B123

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773198.1

1158 aa

579

1158

TRAPPC11_N

Foie-gras_1

DUF8387

Gryzun-like

PF29907 TRAPPC11_N 66-163 aa PF11817 Foie-gras_1 254-522 aa PF28382 DUF8387 745-899 aa PF12742 Gryzun-like 1044-1135 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773198.1`	Pfam	`PF29907`	TRAPPC11_N	Domain	66	163	1.4e-10	41.8	Trafficking protein particle complex subunit 11 N-terminal domain
`XP_057773198.1`	Pfam	`PF11817`	Foie-gras_1	Repeat	254	522	9.5e-69	232.6	Foie gras liver health family 1
`XP_057773198.1`	Pfam	`PF28382`	DUF8387	Domain	745	899	3.3e-79	264.6	Domain of unknown function (DUF8387)
`XP_057773198.1`	Pfam	`PF12742`	Gryzun-like	Domain	1044	1135	3.2e-13	50.3	TRAPPC11 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057917215.1
ATCTCGTAATTTGATCTTCAGCAAATCTACAGGCCCAATAAAACTGGCGGCCCGTAGTTGTTCGTTCATCTTCCACGCACAGTGCGACTGCCATAAGCTCTGATTCAGTCCTAATCCTAATCGCAAGCAAGTAAACTCAATTCAATCCAACATCAATGGAGGAATACCCGGAGGAGCTGCGTACGCCGCCGGTAGCTCTGACGTGTCTGGTGGGCTGCCCGGAGATCCATCCCCTGATTACGGCGCACCTCCACTCGCAG...

CDS

1 records

下载 CDS FASTA

LOC130992543
ATGGAGGAATACCCGGAGGAGCTGCGTACGCCGCCGGTAGCTCTGACGTGTCTGGTGGGCTGCCCGGAGATCCATCCCCTGATTACGGCGCACCTCCACTCGCAGCAGCCCCCAATCAACGCCATCGCATTGCCCGATTTCTCCAAGATCTCCGTGATCCCCCCGAAGAAGCCCCCCAGAGAGACTTCGGAGCCCCCTTCCGGCATTATAAAGAGAGATTGGCTCTCCAAGCACCGCACTAGGATCCCCGCCGTCGTCGC...

Protein

1 records

下载 Protein FASTA

XP_057773198.1
MEEYPEELRTPPVALTCLVGCPEIHPLITAHLHSQQPPINAIALPDFSKISVIPPKKPPRETSEPPSGIIKRDWLSKHRTRIPAVVAAIFCSRDVSGDPAQWLQVCTDLENLKASMRGRNIKLVVLVVTQWDNKDDTSEERILALRKRAEVDSKNLISFVLDHEEELQQSLNRLWTVFGELANTYYRDEGRRVRSRLEKKSYTSMELHVRYCFKVAIYAEFRRDWLEALKLYEDAYHALREMVGTSTRMPPIQRLVEIKA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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