Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003412`

染色体: Chr01 坐标: 52779853-52783945 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003412`
名称	SmilChr01G003412
描述	sterol 3-beta-glucosyltransferase UGT80B1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	52779853 - 52783945 / `+`

ID 对照

NCBI Gene ID	`LOC130992554`
GeneID	`130992554`
locus_tag	`-`
NCBI Name	`LOC130992554`
原始查询	`LOC130992554`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	sterol 3-beta-glucosyltransferase UGT80B1-like
产物	sterol 3-beta-glucosyltransferase UGT80B1-like
Arabidopsis	`AT1G43620` (UGT80B1) UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840946] identity=63.1; qcov=0.989; evalue=0; confidence=high
Rice	`Os01g0867600` - identity=64.9; qcov=0.908; evalue=0; confidence=high
GO	GO:0005975 (carbohydrate metabolic process); GO:0008194 (UDP-glycosyltransferase activity); GO:0016758 (hexosyltransferase activity); GO:0030259 (GO:0030259)
KEGG	-
Pfam	PF00201 (UDPGT); PF03033 (Glyco_transf_28); PF06722 (EryCIII-like_C)
InterPro	-
eggNOG	-
NR	GeneID:130992554

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057773218.1`
2	Nucleus	细胞核	0.00000	`XP_057773218.1`
3	Chromosome	染色体	0.00000	`XP_057773218.1`
4	Centromere	着丝粒	0.00000	`XP_057773218.1`
5	Chromatin	染色质	0.00000	`XP_057773218.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:52780347`	`G`	`GGT`	2bp_insertion	frameshift_variant	1	C26
`Chr1:52780347`	`G`	`GGT`	2bp_insertion	CDS_variant	1	C26
`Chr1:52780944`	`CT`	`C`	1bp_deletion	frameshift_variant	1	C19
`Chr1:52780944`	`CT`	`C`	1bp_deletion	CDS_variant	1	C19
`Chr1:52780962`	`G`	`A`	EMS_canonical_SNV	stop_gained	5	B105,B108,B75,C23,C26
`Chr1:52780962`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B105,B108,B75,C23,C26
`Chr1:52781034`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B127,D10
`Chr1:52781055`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr1:52782028`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B106,B16,C56,C86
`Chr1:52782746`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C41
`Chr1:52782922`	`AT`	`A`	1bp_deletion	frameshift_variant	4	B32,B91,C37,C57
`Chr1:52782922`	`AT`	`A`	1bp_deletion	CDS_variant	4	B32,B91,C37,C57

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773218.1

470 aa

235

470

Glyco_transf_28

UDPGT

EryCIII-like_C

PF03033 Glyco_transf_28 15-159 aa PF00201 UDPGT 256-412 aa PF06722 EryCIII-like_C 314-412 aa

XP_057773226.1

468 aa

234

468

Glyco_transf_28

UDPGT

EryCIII-like_C

PF03033 Glyco_transf_28 15-159 aa PF00201 UDPGT 256-410 aa PF06722 EryCIII-like_C 309-410 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773218.1`	Pfam	`PF03033`	Glyco_transf_28	Family	15	159	3.5e-26	92.6	Glycosyltransferase family 28 N-terminal domain
`XP_057773218.1`	Pfam	`PF00201`	UDPGT	Family	256	412	4.2e-06	26.6	UDP-glucoronosyl and UDP-glucosyl transferase
`XP_057773218.1`	Pfam	`PF06722`	EryCIII-like_C	Domain	314	412	1.7e-11	45.0	Erythromycin biosynthesis protein CIII-like, C-terminal domain
`XP_057773226.1`	Pfam	`PF03033`	Glyco_transf_28	Family	15	159	3.5e-26	92.7	Glycosyltransferase family 28 N-terminal domain
`XP_057773226.1`	Pfam	`PF00201`	UDPGT	Family	256	410	1.7e-06	27.8	UDP-glucoronosyl and UDP-glucosyl transferase
`XP_057773226.1`	Pfam	`PF06722`	EryCIII-like_C	Domain	309	410	4.7e-12	46.8	Erythromycin biosynthesis protein CIII-like, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009091310.1
ATTTAATATAATCATTTCATTTCTTCCGCTCTGCATGGCGCGCGTGTATACATACATACATACATATATGTTTGTGTTTCTTGAATTTCTTGTTCCAAATTTGAGCGGTTTGAATTATCTAAAGAATCTCATCAGTTTAGTTTGATCCATTATTAAGACCCGTTCATTTTATTTGATTTCTTTGGTGATATGTCGACTGAATATTACAATGAATCAACCCCAAAGTTAAGCATTGCAATTCTTGCAGTCGGAACGAGAGG...

XR_009091309.1
ATAATCATTTCATTTCTTCCGCTCTGCATGGCGCGCGTGTATACATACATACATACATATATGTTTGTGTTTCTTGAATTTCTTGTTCCAAATTTGAGCGGTTTGAATTATCTAAAGAATCTCATCAGTTTAGTTTGATCCATTATTAAGACCCGTTCATTTTATTTGATTTCTTTGGTGATATGTCGACTGAATATTACAATGAATCAACCCCAAAGTTAAGCATTGCAATTCTTGCAGTCGGAACGAGAGGCGACGTT...

CDS

2 records

下载 CDS FASTA

LOC130992554
ATGTCGACTGAATATTACAATGAATCAACCCCAAAGTTAAGCATTGCAATTCTTGCAGTCGGAACGAGAGGCGACGTTCAACCTTTTCTGGCTGTCGCAAGGAGACTTCAGGAATACGGTCATCGTGTGAGGTTGGCAACTCACTCTCAATTCCATGGATTGGTGAAGTCGGCCGCTGTAGATTTTTACCCACTTGGTGGCGACCCTCGAGTTATAGTCCAAGGTTTCATGAAGACTCAAAACTTACTATTAACTACATG...

Protein

2 records

下载 Protein FASTA

XP_057773218.1
MSTEYYNESTPKLSIAILAVGTRGDVQPFLAVARRLQEYGHRVRLATHSQFHGLVKSAAVDFYPLGGDPRVIVQGFMKTQNLLLTTWRDISTQLKQLKAVMESLLPACTQPDPITGEPFMAQAIIANPPTYGRVDVAEALGVPLHIFFTVPWTPTCAFPHPFIPYISHRAGYWLSYVVVDLVIWWGLRGYINKLRKNKLNLGPINGLFNTNHVSISHLPTTYMWSPCILPKPNDWGPLVDVVGYCFLELGSIYEPPQEFV...

XP_057773226.1
MSTEYYNESTPKLSIAILAVGTRGDVQPFLAVARRLQEYGHRVRLATHSQFHGLVKSAAVDFYPLGGDPRVIVQGFMKTQNLLLTTWRDISTQLKQLKAVMESLLPACTQPDPITGEPFMAQAIIANPPTYGRVDVAEALGVPLHIFFTVPWTPTCAFPHPFIPYISHRAGYWLSYVVVDLVIWWGLRGYINKLRKNKLNLGPINGLFNTNHVSISHLPTTYMWSPCILPKPNDWGPLVDVVGYCFLELGSIYEPPQEFV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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