当前解析结果
SmilChr07G001471| 统一新 Gene ID | SmilChr07G001471 |
|---|---|
| 名称 | SmilChr07G001471 |
| 描述 | protein transport protein SEC23 E-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 11549626 - 11558672 / + |
| NCBI Gene ID | LOC130992556 |
|---|---|
| GeneID | 130992556 |
| locus_tag | - |
| NCBI Name | LOC130992556 |
| 原始查询 | LOC130992556 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein transport protein SEC23 E-like |
| 产物 | protein transport protein SEC23 E-like |
| Arabidopsis | AT3G23660 (AT3G23660)Sec23/Sec24 protein transport family protein [Source:NCBI gene (formerly Entrezgene);Acc:821946] identity=73.8; qcov=0.997; evalue=0; confidence=high |
| Rice | Os08g0474700- identity=60.8; qcov=0.999; evalue=0; confidence=high |
| GO | GO:0005096 (GTPase activator activity); GO:0006886 (intracellular protein transport); GO:0006888 (endoplasmic reticulum to Golgi vesicle-mediated transport); GO:0008270 (zinc ion binding); GO:0030127 (COPII vesicle coat); GO:0070971 (endoplasmic reticulum exit site); GO:0090110 (COPII-coated vesicle cargo loading); GO:0090114 (COPII-coated vesicle budding) |
| KEGG | smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00626 (Gelsolin); PF04810 (zf-Sec23_Sec24); PF04811 (Sec23_trunk); PF04815 (Sec23_helical); PF08033 (Sec23_BS) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992556 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057773215.1 |
| 2 | Cytoplasmic vesicle | 细胞质囊泡 | 0.80000 | XP_057773215.1 |
| 3 | Vesicle | 囊泡 | 0.60000 | XP_057773215.1 |
| 4 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057773215.1 |
| 5 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057773215.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:11550119 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B43,B57 |
Chr7:11550122 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B43,B57 |
Chr7:11550386 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr7:11550563 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:11553399 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:11556792 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B129,C17,D5 |
Chr7:11556994 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A5,B129,B13,C60 |
Chr7:11557936 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:11558262 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B111,B123,C13 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057773215.1PF04810
zf-Sec23_Sec24 58-96 aa
PF04811
Sec23_trunk 134-410 aa
PF08033
Sec23_BS 420-524 aa
PF04815
Sec23_helical 535-633 aa
PF00626
Gelsolin 647-735 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773215.1 |
Pfam | PF04810 |
zf-Sec23_Sec24 | Domain | 58 | 96 | 6.8e-16 | 58.7 | Sec23/Sec24 zinc finger |
XP_057773215.1 |
Pfam | PF04811 |
Sec23_trunk | Domain | 134 | 410 | 1.9e-61 | 208.4 | Sec23/Sec24 trunk domain |
XP_057773215.1 |
Pfam | PF08033 |
Sec23_BS | Domain | 420 | 524 | 1.4e-26 | 93.6 | Sec23/Sec24 beta-sandwich domain |
XP_057773215.1 |
Pfam | PF04815 |
Sec23_helical | Domain | 535 | 633 | 7.3e-26 | 90.7 | Sec23/Sec24 helical domain |
XP_057773215.1 |
Pfam | PF00626 |
Gelsolin | Domain | 647 | 735 | 7.7e-16 | 58.4 | Gelsolin repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。