当前解析结果
SmilChr07G001381| 统一新 Gene ID | SmilChr07G001381 |
|---|---|
| 名称 | SmilChr07G001381 |
| 描述 | uncharacterized SmilChr07G001381 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 10721292 - 10727996 / - |
| NCBI Gene ID | LOC130992573 |
|---|---|
| GeneID | 130992573 |
| locus_tag | - |
| NCBI Name | LOC130992573 |
| 原始查询 | LOC130992573 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNA repair protein RadA-like protein [Source:NCBI gene (formerly Entrezgene);Acc:835101]; symbol=AT5G50340; hit=AT5G50340; species=arabidopsis; confidence=high |
| 产物 | DNA repair protein RadA-like protein [Source:NCBI gene (formerly Entrezgene);Acc:835101]; symbol=AT5G50340; hit=AT5G50340; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G50340 (AT5G50340)DNA repair protein RadA-like protein [Source:NCBI gene (formerly Entrezgene);Acc:835101] identity=66.6; qcov=0.782; evalue=0; confidence=high |
| Rice | Os06g0151600 (P0529C07.24-1)- identity=59.7; qcov=0.875; evalue=0; confidence=high |
| GO | GO:0000725 (recombinational repair); GO:0003684 (damaged DNA binding); GO:0005524 (ATP binding); GO:0016887 (ATP hydrolysis activity); GO:0140664 (ATP-dependent DNA damage sensor activity) |
| KEGG | - |
| Pfam | PF00004 (AAA); PF05362 (Lon_C); PF06745 (ATPase); PF13481 (AAA_25); PF13541 (ChlI); PF18073 (Zn_ribbon_LapB) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992573 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057773243.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.80000 | XP_057773243.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057773243.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057773243.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057773243.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:10721542 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B111,B39,B91,C24,C58 |
Chr7:10721556 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B111,B39,B91,C24 |
Chr7:10726171 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C2,C39 |
Chr7:10727269 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B122 |
Chr7:10727269 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B122 |
Chr7:10727281 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr7:10727287 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A18,B82,B84,D11 |
Chr7:10727352 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr7:10727381 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr7:10727504 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr7:10727742 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D5 |
Chr7:10727790 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057773243.1PF18073
Zn_ribbon_LapB 155-181 aa
PF06745
ATPase 240-323 aa
PF13481
AAA_25 241-382 aa
PF00004
AAA 253-384 aa
PF13541
ChlI 500-590 aa
PF05362
Lon_C 533-621 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773243.1 |
Pfam | PF18073 |
Zn_ribbon_LapB | Domain | 155 | 181 | 4.5e-07 | 30.1 | Rubredoxin metal binding domain |
XP_057773243.1 |
Pfam | PF06745 |
ATPase | Domain | 240 | 323 | 7.5e-11 | 42.5 | KaiC |
XP_057773243.1 |
Pfam | PF13481 |
AAA_25 | Domain | 241 | 382 | 2.6e-19 | 70.4 | AAA domain |
XP_057773243.1 |
Pfam | PF00004 |
AAA | Domain | 253 | 384 | 2.2e-06 | 28.8 | ATPase family associated with various cellular activities (AAA) |
XP_057773243.1 |
Pfam | PF13541 |
ChlI | Domain | 500 | 590 | 7.7e-08 | 33.0 | Subunit ChlI of Mg-chelatase |
XP_057773243.1 |
Pfam | PF05362 |
Lon_C | Domain | 533 | 621 | 1.7e-05 | 25.2 | Lon protease (S16) C-terminal proteolytic domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。