当前解析结果
SmilChr07G001521| 统一新 Gene ID | SmilChr07G001521 |
|---|---|
| 名称 | SmilChr07G001521 |
| 描述 | glutamyl-tRNA reductase 1, chloroplastic-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 12193365 - 12196393 / - |
| NCBI Gene ID | LOC130992583 |
|---|---|
| GeneID | 130992583 |
| locus_tag | - |
| NCBI Name | LOC130992583 |
| 原始查询 | LOC130992583 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glutamyl-tRNA reductase 1, chloroplastic-like |
| 产物 | glutamyl-tRNA reductase 1%2C chloroplastic-like |
| Arabidopsis | AT1G58290 (HEMA1)Glutamyl-tRNA reductase family protein [Source:NCBI gene (formerly Entrezgene);Acc:842198] identity=77.5; qcov=1; evalue=0; confidence=high |
| Rice | Os10g0502400 (HEMA1)- identity=75.2; qcov=0.846; evalue=0; confidence=high |
| GO | GO:0008883 (glutamyl-tRNA reductase activity); GO:0033014 (tetrapyrrole biosynthetic process); GO:0050661 (NADP binding) |
| KEGG | smil00860 (Porphyrin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00745 (GlutR_dimer); PF01488 (Shikimate_DH); PF03807 (F420_oxidored); PF05201 (GlutR_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992583 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057773254.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057773254.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057773254.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057773254.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057773254.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:12193715 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr7:12193850 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B140,C5 |
Chr7:12193930 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr7:12193942 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B140,B59,C83 |
Chr7:12193995 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B44 |
Chr7:12193995 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B44 |
Chr7:12194208 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C62 |
Chr7:12194227 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A19,B45 |
Chr7:12194326 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C75,D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057773254.1PF05201
GlutR_N 107-257 aa
PF01488
Shikimate_DH 273-414 aa
PF03807
F420_oxidored 290-355 aa
PF00745
GlutR_dimer 428-532 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773254.1 |
Pfam | PF05201 |
GlutR_N | Domain | 107 | 257 | 6.8e-49 | 166.3 | Glutamyl-tRNAGlu reductase, N-terminal domain |
XP_057773254.1 |
Pfam | PF01488 |
Shikimate_DH | Family | 273 | 414 | 2.5e-42 | 144.9 | Shikimate / quinate 5-dehydrogenase |
XP_057773254.1 |
Pfam | PF03807 |
F420_oxidored | Family | 290 | 355 | 2.9e-05 | 25.3 | NADP oxidoreductase coenzyme F420-dependent |
XP_057773254.1 |
Pfam | PF00745 |
GlutR_dimer | Domain | 428 | 532 | 9.5e-29 | 100.4 | Glutamyl-tRNAGlu reductase, dimerisation domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。