Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001418`

染色体: Chr07 坐标: 11030596-11033283 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001418`
名称	SmilChr07G001418
描述	flavonoid 8-hydroxylase 2, chloroplastic-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	11030596 - 11033283 / `+`

ID 对照

NCBI Gene ID	`LOC130992584`
GeneID	`130992584`
locus_tag	`-`
NCBI Name	`LOC130992584`
原始查询	`LOC130992584`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	flavonoid 8-hydroxylase 2, chloroplastic-like
产物	flavonoid 8-hydroxylase 2%2C chloroplastic-like
Arabidopsis	`AT4G25650` (ACD1-LIKE) ACD1-like protein [Source:NCBI gene (formerly Entrezgene);Acc:828670] identity=60.5; qcov=0.883; evalue=0; confidence=high
Rice	`Os03g0805700` - identity=45.6; qcov=0.956; evalue=9.89e-161; confidence=high
GO	GO:0010277 (chlorophyllide a oxygenase activity); GO:0051537 (2 iron, 2 sulfur cluster binding)
KEGG	-
Pfam	PF00355 (Rieske); PF08417 (PaO)
InterPro	-
eggNOG	-
NR	GeneID:130992584

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057773255.1`
2	Chloroplast membrane	叶绿体膜	0.80000	`XP_057773255.1`
3	Chloroplast thylakoid	类囊体	0.60000	`XP_057773255.1`
4	Chloroplast thylakoid membrane	类囊体膜	0.20000	`XP_057773255.1`
5	Nucleus	细胞核	0.00000	`XP_057773255.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:11030818`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B52
`Chr7:11030864`	`TC`	`T`	1bp_deletion	frameshift_variant	5	B121,B122,C42,C47,C71
`Chr7:11030864`	`TC`	`T`	1bp_deletion	CDS_variant	5	B121,B122,C42,C47,C71
`Chr7:11030896`	`G`	`GAT`	2bp_insertion	frameshift_variant	4	B121,B57,C47,C71
`Chr7:11030896`	`G`	`GAT`	2bp_insertion	CDS_variant	4	B121,B57,C47,C71
`Chr7:11030904`	`AGG`	`A`	2bp_deletion	frameshift_variant	3	B121,B57,C47
`Chr7:11030904`	`AGG`	`A`	2bp_deletion	CDS_variant	3	B121,B57,C47
`Chr7:11030919`	`G`	`A`	EMS_canonical_SNV	stop_gained	11	A13,A19,B118,B21,B76,B88,C17,C54,C68,C69,C74
`Chr7:11030924`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B121,C16,C17,C47,C71
`Chr7:11030930`	`TG`	`T`	1bp_deletion	frameshift_variant	5	A11,B34,B49,B67,C8
`Chr7:11030930`	`TG`	`T`	1bp_deletion	CDS_variant	5	A11,B34,B49,B67,C8
`Chr7:11031010`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A22,B122,C44,C67

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773255.1

548 aa

274

548

Rieske

PaO

PF00355 Rieske 83-167 aa PF08417 PaO 298-409 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773255.1`	Pfam	`PF00355`	Rieske	Domain	83	167	1.9e-23	82.9	Rieske [2Fe-2S] domain
`XP_057773255.1`	Pfam	`PF08417`	PaO	Family	298	409	5.4e-24	84.9	Pheophorbide a oxygenase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057917272.1
GAGGGAAAAAGTTCCCTATATACACACACATTTGGATGGAATTGAAAATGAAGTGGTGCTGAAACGAAGCGACGAACTGTCAGCCATGGAAGCTCTAAAAGTTTCATCTTTCCAATCATTCCACCGCCAACCCATCTCAAGGCGAAATCCCAGAATCGCATTCGAAAAATCCATTCTGCATACCCCATCATCTCGACGAATCCCGACGACTTTCCAGAAATTGAATTTCAAGATTTTCACCGCGGTTTCTCCGACGACGG...

CDS

1 records

下载 CDS FASTA

LOC130992584
ATGGAAGCTCTAAAAGTTTCATCTTTCCAATCATTCCACCGCCAACCCATCTCAAGGCGAAATCCCAGAATCGCATTCGAAAAATCCATTCTGCATACCCCATCATCTCGACGAATCCCGACGACTTTCCAGAAATTGAATTTCAAGATTTTCACCGCGGTTTCTCCGACGACGGTGGAATCTTCGGCGCCGCCCGATAACGAGATTGAATCCGAGAAGAGAGAGGAACAATTCGATTGGTACGAGCAGTGGTACCCGGT...

Protein

1 records

下载 Protein FASTA

XP_057773255.1
MEALKVSSFQSFHRQPISRRNPRIAFEKSILHTPSSRRIPTTFQKLNFKIFTAVSPTTVESSAPPDNEIESEKREEQFDWYEQWYPVWPVCDLDKRRPHAKKVIGIDVVVWWDRNENAWKVFEDSCPHRLAPLSEGRIDQWGRLQCVYHGWCFGGAGDCKFIPQAPRDGPPVHTTNKACVAVYPSGVQNGILWFWPNSDPHYKDIYATKKPHYIPELDDPSYTTMINARDIGYGYEVLIENLMDPAHIPYAHYGLLKTGK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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