当前解析结果
SmilChr07G001473| 统一新 Gene ID | SmilChr07G001473 |
|---|---|
| 名称 | SmilChr07G001473 |
| 描述 | UDP-glycosyltransferase 75C1-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 11571098 - 11572614 / - |
| NCBI Gene ID | LOC130992609 |
|---|---|
| GeneID | 130992609 |
| locus_tag | - |
| NCBI Name | LOC130992609 |
| 原始查询 | LOC130992609 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | UDP-glycosyltransferase 75C1-like |
| 产物 | UDP-glycosyltransferase 75C1-like |
| Arabidopsis | AT4G15550 (IAGLU)indole-3-acetate beta-D-glucosyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:827229] identity=46.3; qcov=1.04; evalue=2.14e-143; confidence=high |
| Rice | Os06g0593200- identity=42.7; qcov=0.974; evalue=3.77e-112; confidence=medium |
| GO | GO:0008194 (UDP-glycosyltransferase activity) |
| KEGG | - |
| Pfam | PF00201 (UDPGT); PF26168 (Glyco_transf_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992609 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057773297.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057773297.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057773297.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057773297.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057773297.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:11571199 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B44 |
Chr7:11571199 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr7:11571391 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B38 |
Chr7:11571506 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr7:11571541 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B67 |
Chr7:11571645 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr7:11571648 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C3,D1 |
Chr7:11571762 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B66,B94,C23,C71 |
Chr7:11571811 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B125,B140 |
Chr7:11571970 |
AGC |
A |
2bp_deletion | frameshift_variant | 44 | A16,A18,A19,A20,A4,B104,B11,B113,B114,B123,B132,B138,B30,B31,B34,B38,B39,B44,B60,B64,B67,B73,B74,B85,B90,B92,B97,B98,B99,C15,C24,C36,C37,C48,C57,C64,C66,C70,C71,C72,C8,D10,D11,D6 |
Chr7:11571973 |
A |
ATT |
2bp_insertion | frameshift_variant | 41 | A16,A18,A19,A20,A4,B104,B11,B113,B114,B123,B132,B138,B30,B31,B34,B38,B44,B60,B64,B67,B73,B74,B85,B90,B92,B97,B98,B99,C15,C24,C36,C37,C48,C57,C64,C66,C70,C71,C72,D10,D11 |
Chr7:11572035 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057773297.1PF26168
Glyco_transf_N 5-65 aa
PF00201
UDPGT 264-413 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773297.1 |
Pfam | PF26168 |
Glyco_transf_N | Domain | 5 | 65 | 1.1e-07 | 32.7 | Glycosyltransferase, N-terminal domain |
XP_057773297.1 |
Pfam | PF00201 |
UDPGT | Family | 264 | 413 | 1.3e-22 | 81.1 | UDP-glucoronosyl and UDP-glucosyl transferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。