Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001404`

染色体: Chr07 坐标: 10924307-10926416 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001404`
名称	SmilChr07G001404
描述	pentatricopeptide repeat-containing protein At1g77405
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	10924307 - 10926416 / `+`

ID 对照

NCBI Gene ID	`LOC130992611`
GeneID	`130992611`
locus_tag	`-`
NCBI Name	`LOC130992611`
原始查询	`LOC130992611`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At1g77405
产物	pentatricopeptide repeat-containing protein At1g77405
Arabidopsis	`AT1G77405` (AT1G77405) Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844077] identity=61.3; qcov=0.94; evalue=0; confidence=high
Rice	`Os03g0736200` (OSJNBb0016H12.12) - identity=57.3; qcov=0.605; evalue=3.16e-110; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:130992611

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057773300.1`
2	Nucleus	细胞核	0.00000	`XP_057773300.1`
3	Chromosome	染色体	0.00000	`XP_057773300.1`
4	Centromere	着丝粒	0.00000	`XP_057773300.1`
5	Chromatin	染色质	0.00000	`XP_057773300.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:10925090`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B104,B44,B8,D7
`Chr7:10925392`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B78,B82
`Chr7:10925418`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr7:10925622`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A5,C32,C58,C68,C8
`Chr7:10925708`	`GT`	`G`	1bp_deletion	frameshift_variant	1	B137
`Chr7:10925708`	`GT`	`G`	1bp_deletion	CDS_variant	1	B137
`Chr7:10925710`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B137
`Chr7:10925780`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A5,C32,C58,C68,C8
`Chr7:10925789`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773300.1

453 aa

226

453

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR_3

PPR_1

PPR_long

PPR_2

PPR

TPR_24

PPR_1

PPR

PF13041 PPR_2 169-217 aa PF01535 PPR 171-200 aa PF13812 PPR_3 171-213 aa PF12854 PPR_1 200-232 aa PF13041 PPR_2 203-254 aa PF01535 PPR 207-232 aa PF12854 PPR_1 238-254 aa PF13041 PPR_2 268-300 aa PF13812 PPR_3 276-333 aa PF12854 PPR_1 282-315 aa PF17177 PPR_long 282-414 aa PF13041 PPR_2 286-331 aa PF01535 PPR 289-319 aa PF23276 TPR_24 289-380 aa PF12854 PPR_1 318-350 aa PF01535 PPR 324-353 aa

XP_057773301.1

453 aa

226

453

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR_3

PPR_1

PPR_long

PPR_2

PPR

TPR_24

PPR_1

PPR

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773300.1`	Pfam	`PF13041`	PPR_2	Repeat	169	217	3.9e-58	194.1	PPR repeat family
`XP_057773300.1`	Pfam	`PF01535`	PPR	Repeat	171	200	5.8e-36	120.9	PPR repeat
`XP_057773300.1`	Pfam	`PF13812`	PPR_3	Repeat	171	213	1e-20	74.3	Pentatricopeptide repeat domain
`XP_057773300.1`	Pfam	`PF12854`	PPR_1	Repeat	200	232	2.2e-47	159.1	PPR repeat
`XP_057773300.1`	Pfam	`PF13041`	PPR_2	Repeat	203	254	3.9e-58	194.1	PPR repeat family
`XP_057773300.1`	Pfam	`PF01535`	PPR	Repeat	207	232	5.8e-36	120.9	PPR repeat
`XP_057773300.1`	Pfam	`PF12854`	PPR_1	Repeat	238	254	2.2e-47	159.1	PPR repeat
`XP_057773300.1`	Pfam	`PF13041`	PPR_2	Repeat	268	300	3.9e-58	194.1	PPR repeat family
`XP_057773300.1`	Pfam	`PF13812`	PPR_3	Repeat	276	333	1e-20	74.3	Pentatricopeptide repeat domain
`XP_057773300.1`	Pfam	`PF12854`	PPR_1	Repeat	282	315	2.2e-47	159.1	PPR repeat
`XP_057773300.1`	Pfam	`PF17177`	PPR_long	Repeat	282	414	1.9e-11	44.5	Pentacotripeptide-repeat region of PRORP
`XP_057773300.1`	Pfam	`PF13041`	PPR_2	Repeat	286	331	3.9e-58	194.1	PPR repeat family
`XP_057773300.1`	Pfam	`PF01535`	PPR	Repeat	289	319	5.8e-36	120.9	PPR repeat
`XP_057773300.1`	Pfam	`PF23276`	TPR_24	Repeat	289	380	4.7e-11	43.4	Pentatricopeptide repeat-containing protein
`XP_057773300.1`	Pfam	`PF12854`	PPR_1	Repeat	318	350	2.2e-47	159.1	PPR repeat
`XP_057773300.1`	Pfam	`PF01535`	PPR	Repeat	324	353	5.8e-36	120.9	PPR repeat
`XP_057773301.1`	Pfam	`PF13041`	PPR_2	Repeat	169	217	3.9e-58	194.1	PPR repeat family
`XP_057773301.1`	Pfam	`PF01535`	PPR	Repeat	171	200	5.8e-36	120.9	PPR repeat
`XP_057773301.1`	Pfam	`PF13812`	PPR_3	Repeat	171	213	1e-20	74.3	Pentatricopeptide repeat domain
`XP_057773301.1`	Pfam	`PF12854`	PPR_1	Repeat	200	232	2.2e-47	159.1	PPR repeat
`XP_057773301.1`	Pfam	`PF13041`	PPR_2	Repeat	203	254	3.9e-58	194.1	PPR repeat family
`XP_057773301.1`	Pfam	`PF01535`	PPR	Repeat	207	232	5.8e-36	120.9	PPR repeat
`XP_057773301.1`	Pfam	`PF12854`	PPR_1	Repeat	238	254	2.2e-47	159.1	PPR repeat
`XP_057773301.1`	Pfam	`PF13041`	PPR_2	Repeat	268	300	3.9e-58	194.1	PPR repeat family
`XP_057773301.1`	Pfam	`PF13812`	PPR_3	Repeat	276	333	1e-20	74.3	Pentatricopeptide repeat domain
`XP_057773301.1`	Pfam	`PF12854`	PPR_1	Repeat	282	315	2.2e-47	159.1	PPR repeat
`XP_057773301.1`	Pfam	`PF17177`	PPR_long	Repeat	282	414	1.9e-11	44.5	Pentacotripeptide-repeat region of PRORP
`XP_057773301.1`	Pfam	`PF13041`	PPR_2	Repeat	286	331	3.9e-58	194.1	PPR repeat family
`XP_057773301.1`	Pfam	`PF01535`	PPR	Repeat	289	319	5.8e-36	120.9	PPR repeat
`XP_057773301.1`	Pfam	`PF23276`	TPR_24	Repeat	289	380	4.7e-11	43.4	Pentatricopeptide repeat-containing protein
`XP_057773301.1`	Pfam	`PF12854`	PPR_1	Repeat	318	350	2.2e-47	159.1	PPR repeat
`XP_057773301.1`	Pfam	`PF01535`	PPR	Repeat	324	353	5.8e-36	120.9	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057917318.1
ACTGAGCTTTTTTTTTTTGAGGGAATAATACTGAGCTTTTTGAAGGTACTTAAAAGTTAAAACGGAAAAAAAATGCCCAAAAATGTAATAACCACCATTTTCATTTATCAGCGGCGTTCGTTTCGATTTTCTCCATGTCCTTCCCGGCGCCGCTCCGGCGCCGCTTCTCCACCCAAACCAACCACCTAGTCGGCCAAGTGCTGGCGGCGATAATCCAAAACAAACCCTTCACTACCTCCCCTCCACCCCACCACCGCACC...

XM_057917317.1
GAGCTTTTTTTTTTTGAGGGAATAATACTGAGCTTTTTGAAGGTACTTAAAAGTTAAAACGGAAAAAAAATGCCCAAAAATGTAATAACCACCATTTTCATTTATCAGCGGCGTTCGTTTCGATTTTCTCCATGTCCTTCCCGGCGCCGCTCCGGCGCCGCTTCTCCACCCAAACCAACCACCTAGTCGGCCAAGTGCTGGCGGCGATAATCCAAAACAAACCCTTCACTACCTCCCCTCCACCCCACCACCGCACCTGG...

CDS

2 records

下载 CDS FASTA

LOC130992611
ATGTCCTTCCCGGCGCCGCTCCGGCGCCGCTTCTCCACCCAAACCAACCACCTAGTCGGCCAAGTGCTGGCGGCGATAATCCAAAACAAACCCTTCACTACCTCCCCTCCACCCCACCACCGCACCTGGACTTCAGAAAGTGTAATTCAAGTGCTAAGATCAATCCCATTATACCTCTTCCAATCCCCAAGATCAATCGGCCGCCAAAAAACCTTCCGCCACCGCTCTCCGCTCCGGCAGAGAAATCTCCGGCAAGAAAC...

Protein

2 records

下载 Protein FASTA

XP_057773300.1
MSFPAPLRRRFSTQTNHLVGQVLAAIIQNKPFTTSPPPHHRTWTSESVIQVLRSIPLYLFQSPRSIGRQKTFRHRSPLRQRNLRQETLKFQKGALVLGPAAHRDPKRLNLGLEKALDFYYWVETYFGFQHDERTCREMALVLAKGNRMNLLWDFLKNMSGRYKKFNLVTTVTMTCLIKALGEEGLVNEAMSAFYRMKQFHCKPDIYAYNNVIYALCRVGFFKKAKFLFEQMELPGFRCPPDVFTYTILISSYCRYAMETG...

XP_057773301.1
MSFPAPLRRRFSTQTNHLVGQVLAAIIQNKPFTTSPPPHHRTWTSESVIQVLRSIPLYLFQSPRSIGRQKTFRHRSPLRQRNLRQETLKFQKGALVLGPAAHRDPKRLNLGLEKALDFYYWVETYFGFQHDERTCREMALVLAKGNRMNLLWDFLKNMSGRYKKFNLVTTVTMTCLIKALGEEGLVNEAMSAFYRMKQFHCKPDIYAYNNVIYALCRVGFFKKAKFLFEQMELPGFRCPPDVFTYTILISSYCRYAMETG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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