Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001516`

染色体: Chr07 坐标: 12111422-12115763 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001516`
名称	SmilChr07G001516
描述	uncharacterized SmilChr07G001516
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	12111422 - 12115763 / `+`

ID 对照

NCBI Gene ID	`LOC130992640`
GeneID	`130992640`
locus_tag	`-`
NCBI Name	`LOC130992640`
原始查询	`LOC130992640`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Pseudouridine synthase family protein [Source:NCBI gene (formerly Entrezgene);Acc:819880]; symbol=AT3G06950; hit=AT3G06950; species=arabidopsis; confidence=high
产物	Pseudouridine synthase family protein [Source:NCBI gene (formerly Entrezgene);Acc:819880]; symbol=AT3G06950; hit=AT3G06950; species=arabidopsis; confidence=high
Arabidopsis	`AT3G06950` (AT3G06950) Pseudouridine synthase family protein [Source:NCBI gene (formerly Entrezgene);Acc:819880] identity=63.8; qcov=0.907; evalue=3.44e-146; confidence=high
Rice	`Os05g0279300` - identity=47.6; qcov=0.36; evalue=1.64e-27; confidence=low
GO	GO:0003723 (RNA binding); GO:0009982 (pseudouridine synthase activity); GO:0031119 (tRNA pseudouridine synthesis)
KEGG	-
Pfam	PF01416 (PseudoU_synth_1)
InterPro	-
eggNOG	-
NR	GeneID:130992640

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057773345.1`
2	Mitochondrion matrix	线粒体基质	0.20000	`XP_057773345.1`
3	Chloroplast	叶绿体	0.20000	`XP_057773345.1`
4	Nucleus	细胞核	0.00000	`XP_057773345.1`
5	Chromosome	染色体	0.00000	`XP_057773345.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:12111644`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A8,B122,B96,C13,C40
`Chr7:12113365`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr7:12113621`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B62,B69,C79
`Chr7:12113707`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B134,B45,C1,C6,C68
`Chr7:12113731`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B87,C8
`Chr7:12114275`	`T`	`TG`	1bp_insertion	frameshift_variant	1	C8
`Chr7:12114275`	`T`	`TG`	1bp_insertion	CDS_variant	1	C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773345.1

344 aa

172

344

PseudoU_synth_1

PF01416 PseudoU_synth_1 68-168 aa PF01416 PseudoU_synth_1 208-315 aa

XP_057773346.1

344 aa

172

344

PseudoU_synth_1

PF01416 PseudoU_synth_1 68-168 aa PF01416 PseudoU_synth_1 208-315 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773345.1`	Pfam	`PF01416`	PseudoU_synth_1	Domain	68	168	1.1e-37	129.6	tRNA pseudouridine synthase
`XP_057773345.1`	Pfam	`PF01416`	PseudoU_synth_1	Domain	208	315	1.1e-37	129.6	tRNA pseudouridine synthase
`XP_057773346.1`	Pfam	`PF01416`	PseudoU_synth_1	Domain	68	168	1.1e-37	129.6	tRNA pseudouridine synthase
`XP_057773346.1`	Pfam	`PF01416`	PseudoU_synth_1	Domain	208	315	1.1e-37	129.6	tRNA pseudouridine synthase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057917363.1
ATACTAAAAATGAAAAATGAAATGTATTTTTTAAATGAATCAAAAATAAAATATGAGAAAGAATTTCGAAGATTGAAGGAGCATTTCACCGTTTGGCCGGTCAAAATTTCAGTCGTCAAAACCTCATTCTTATCCCGCTGGGTTTAACAGAACAACATCTGTTGCCGTGTCGTGGAGACGGGCATGTTCACGCTCTCCCACGCGCCGCCGCGTTTTTCTTCCCCTGGAATTTTCCAGAAGAGTGGAGGGCTTGCAGCAGC...

XM_057917362.1
TAAAATATGAGAAAGAATTTCGAAGATTGAAGGAGCATTTCACCGTTTGGCCGGTCAAAATTTCAGTCGTCAAAACCTCATTCTTATCCCGCTGGGTTTAACAGAACAACATCTGTTGCCGTGTCGTGGAGACGGGCATGTTCACGCTCTCCCACGCGCCGCCGCGTTTTTCTTCCCCTGGAATTTTCCAGAAGAGTGGAGGGCTTGCAGCAGCGGGATCCAAATCGTCGTCCCGCCTCTTTCGCAGCCTTCCCGTCAGC...

CDS

2 records

下载 CDS FASTA

LOC130992640
ATGTTCACGCTCTCCCACGCGCCGCCGCGTTTTTCTTCCCCTGGAATTTTCCAGAAGAGTGGAGGGCTTGCAGCAGCGGGATCCAAATCGTCGTCCCGCCTCTTTCGCAGCCTTCCCGTCAGCTCGCCGCCTCTCAAGGAGCTGAGTGATGAAAGGGAGGGTGGTGGAATGCTCCCTTCTCTTGGATATAAGTGGTCCTTGATAATCTCTTATGATGGCACCCGTTTTTCAGGATGGCAATATCAAACGTCAACGCCAAC...

Protein

2 records

下载 Protein FASTA

XP_057773345.1
MFTLSHAPPRFSSPGIFQKSGGLAAAGSKSSSRLFRSLPVSSPPLKELSDEREGGGMLPSLGYKWSLIISYDGTRFSGWQYQTSTPTVQCLLEEALIQITKLGRDHLCLVGAGRTDAGVHAWGQVAHFTTPFNYDCLAGIHKALNGLLPPDIRIREIRSVPSEFHARFSVTSKIYHYKIYNDTIMDPFQRLHVYHSTYKLNPAAMRNAAKHFVGKHDFSAFANTSRNDRTPNPVKNIFRFDVIETGPVLHLEVEGSGFLY...

XP_057773346.1
MFTLSHAPPRFSSPGIFQKSGGLAAAGSKSSSRLFRSLPVSSPPLKELSDEREGGGMLPSLGYKWSLIISYDGTRFSGWQYQTSTPTVQCLLEEALIQITKLGRDHLCLVGAGRTDAGVHAWGQVAHFTTPFNYDCLAGIHKALNGLLPPDIRIREIRSVPSEFHARFSVTSKIYHYKIYNDTIMDPFQRLHVYHSTYKLNPAAMRNAAKHFVGKHDFSAFANTSRNDRTPNPVKNIFRFDVIETGPVLHLEVEGSGFLY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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