Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001435`

染色体: Chr07 坐标: 11139979-11143298 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001435`
名称	SmilChr07G001435
描述	fibrillin protein 5 homolog
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	11139979 - 11143298 / `+`

ID 对照

NCBI Gene ID	`LOC130992650`
GeneID	`130992650`
locus_tag	`-`
NCBI Name	`LOC130992650`
原始查询	`LOC130992650`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	fibrillin protein 5 homolog
产物	fibrillin protein 5 homolog
Arabidopsis	`AT5G09820` (AT5G09820) Plastid-lipid associated protein PAP / fibrillin family protein [Source:NCBI gene (formerly Entrezgene);Acc:830842] identity=62.8; qcov=0.642; evalue=7.3e-75; confidence=high
Rice	`Os04g0422000` (OsFBN5) - identity=68.7; qcov=0.608; evalue=4.47e-78; confidence=high
GO	-
KEGG	-
Pfam	PF04755 (PAP_fibrillin)
InterPro	-
eggNOG	-
NR	GeneID:130992650

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057773361.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057773361.1`
3	Chloroplast thylakoid	类囊体	0.40000	`XP_057773363.1`
4	Nucleus	细胞核	0.00000	`XP_057773361.1`
5	Chromosome	染色体	0.00000	`XP_057773361.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:11140157`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C5
`Chr7:11141827`	`CG`	`C`	1bp_deletion	frameshift_variant	1	C69
`Chr7:11141827`	`CG`	`C`	1bp_deletion	CDS_variant	1	C69
`Chr7:11141833`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B3,B36,C15,C45,C7
`Chr7:11142592`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C5
`Chr7:11142841`	`CA`	`C`	1bp_deletion	frameshift_variant	2	B115,B12
`Chr7:11142841`	`CA`	`C`	1bp_deletion	CDS_variant	2	B115,B12
`Chr7:11142843`	`CT`	`C`	1bp_deletion	frameshift_variant	75	A10,A18,A19,A2,A7,A9,B10,B102,B113,B119,B124,B125,B126,B128,B131,B132,B134,B14,B140,B20,B24,B29,B30,B33,B34,B46,B53,B54,B56,B61,B65,B66,B67,B69,B7,B72,B75,B79,B80,B82,B84,B85,B90,B92,B96,B97,C14,C17,C18,C21,C23,C27,C32,C35,C36,C40,C42,C43,C44,C47,C5,C53,C61,C68,C76,C81,C82,C84,C87,C9,D10,D3,D5,D7,D9
`Chr7:11142877`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C68

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773361.1

303 aa

152

303

PAP_fibrillin

PF04755 PAP_fibrillin 91-273 aa

XP_057773362.1

302 aa

151

302

PAP_fibrillin

PF04755 PAP_fibrillin 90-272 aa

XP_057773363.1

277 aa

138

277

PAP_fibrillin

PF04755 PAP_fibrillin 91-273 aa

XP_057773364.1

276 aa

138

276

PAP_fibrillin

PF04755 PAP_fibrillin 90-272 aa

XP_057773365.1

276 aa

138

276

PAP_fibrillin

PF04755 PAP_fibrillin 64-246 aa

XP_057773366.1

276 aa

138

276

PAP_fibrillin

PF04755 PAP_fibrillin 64-246 aa

XP_057773368.1

268 aa

134

268

PAP_fibrillin

PF04755 PAP_fibrillin 91-235 aa

XP_057773369.1

268 aa

134

268

PAP_fibrillin

PF04755 PAP_fibrillin 91-235 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773361.1`	Pfam	`PF04755`	PAP_fibrillin	Family	91	273	1.1e-34	120.9	PAP_fibrillin
`XP_057773362.1`	Pfam	`PF04755`	PAP_fibrillin	Family	90	272	1.2e-34	120.8	PAP_fibrillin
`XP_057773363.1`	Pfam	`PF04755`	PAP_fibrillin	Family	91	273	7.1e-35	121.5	PAP_fibrillin
`XP_057773364.1`	Pfam	`PF04755`	PAP_fibrillin	Family	90	272	7.7e-35	121.4	PAP_fibrillin
`XP_057773365.1`	Pfam	`PF04755`	PAP_fibrillin	Family	64	246	7e-35	121.5	PAP_fibrillin
`XP_057773366.1`	Pfam	`PF04755`	PAP_fibrillin	Family	64	246	7e-35	121.5	PAP_fibrillin
`XP_057773368.1`	Pfam	`PF04755`	PAP_fibrillin	Family	91	235	2.1e-24	87.3	PAP_fibrillin
`XP_057773369.1`	Pfam	`PF04755`	PAP_fibrillin	Family	91	235	2.1e-24	87.3	PAP_fibrillin

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XM_057917380.1
GGGTTGGTTGCGTTTTAATTTTTGGAGCTCTAACAAATTCAAAGAGTAATCACCAATTCATCATCCACTTATCTGCGCCATTTTTCTTCACTCAATTCTTCTATCGAAAACTACATTGGATTTTTATTTATTTATAGTATTTTTTCGGGCGGCAGCAATGGCGGCAATCGTAGCTACAGTTGGGCCAACGATGGCGGGTGTGACTTCACCAAATTCATCTATTTCTTTTTCTGGTCACCTCTGGCCTTCTCTTCACCCAG...

XM_057917379.1
TAATTTTTGGAGCTCTAACAAATTCAAAGAGTAATCACCAATTCATCATCCACTTATCTGCGCCATTTTTCTTCACTCAATTCTTCTATCGAAAACTACATTGGATTTTTATTTATTTATAGTATTTTTTCGGGCGGCAGCAATGGCGGCAATCGTAGCTACAGTTGGGCCAACGATGGCGGGTGTGACTTCACCAAATTCATCTATTTCTTTTTCTGGTCACCTCTGGCCTTCTCTTCACCCTGCAGTTCAGGTCCGTC...

CDS

8 records

下载 CDS FASTA

LOC130992650
ATGGCGGCAATCGTAGCTACAGTTGGGCCAACGATGGCGGGTGTGACTTCACCAAATTCATCTATTTCTTTTTCTGGTCACCTCTGGCCTTCTCTTCACCCAGCTGCAGTTCAGGTCCGTCATGACAAGACCATTAGATTTGGAGAGAGGCAAAGTCGAAGCTGCACCACTTGTGGATTACTTTCTTCTATCAAAGCTGTAGAAAACAGCTCAGATGAGGTAATCGCACAAGAAATGGAAGAAGCAGAAGAAGAGAATCT...

Protein

8 records

下载 Protein FASTA

XP_057773361.1
MAAIVATVGPTMAGVTSPNSSISFSGHLWPSLHPAAVQVRHDKTIRFGERQSRSCTTCGLLSSIKAVENSSDEVIAQEMEEAEEENLNVSQIKQHLFAALQGINRGIFGVPSAKKSEIQKLVELLESQNPTPQPTLCLDKVAGAWKLIYSTISILGSKRTKLGLRDFINLGDFIQIINVAQGKAVNVIEFSAKGLTLLSGQLTIDASFRIASNSRVDINYQKSVITPDQLMNVFRKNYDVLLEIFNPDGWLEITYVDDSL...

XP_057773362.1
MAAIVATVGPTMAGVTSPNSSISFSGHLWPSLHPAVQVRHDKTIRFGERQSRSCTTCGLLSSIKAVENSSDEVIAQEMEEAEEENLNVSQIKQHLFAALQGINRGIFGVPSAKKSEIQKLVELLESQNPTPQPTLCLDKVAGAWKLIYSTISILGSKRTKLGLRDFINLGDFIQIINVAQGKAVNVIEFSAKGLTLLSGQLTIDASFRIASNSRVDINYQKSVITPDQLMNVFRKNYDVLLEIFNPDGWLEITYVDDSLR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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