当前解析结果
SmilChr01G003460| 统一新 Gene ID | SmilChr01G003460 |
|---|---|
| 名称 | SmilChr01G003460 |
| 描述 | uncharacterized SmilChr01G003460 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 53171301 - 53179032 / - |
| NCBI Gene ID | LOC130992671 |
|---|---|
| GeneID | 130992671 |
| locus_tag | - |
| NCBI Name | LOC130992671 |
| 原始查询 | LOC130992671 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834226]; symbol=AT5G42210; hit=AT5G42210; species=arabidopsis; confidence=high |
| 产物 | Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834226]; symbol=AT5G42210; hit=AT5G42210; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G42210 (AT5G42210)Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834226] identity=56; qcov=0.993; evalue=4.52e-169; confidence=high |
| Rice | Os11g0151500 (OsENA1)- identity=36.6; qcov=0.979; evalue=2.67e-92; confidence=medium |
| GO | GO:0022857 (transmembrane transporter activity); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF07690 (MFS_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992671 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole membrane | 液泡膜 | 0.80000 | XP_057773403.1 |
| 2 | Vacuole | 液泡 | 0.40000 | XP_057773403.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057773403.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057773403.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057773403.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:53173526 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | C85 |
Chr1:53173526 |
GT |
G |
1bp_deletion | CDS_variant | 1 | C85 |
Chr1:53174055 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr1:53174153 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C36,C75 |
Chr1:53175109 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B133,C47,C59 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057773403.1PF07690
MFS_1 10-373 aa
PF07690
MFS_1 238-408 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773403.1 |
Pfam | PF07690 |
MFS_1 | Family | 10 | 373 | 7.4e-35 | 121.2 | Major Facilitator Superfamily |
XP_057773403.1 |
Pfam | PF07690 |
MFS_1 | Family | 238 | 408 | 7.4e-35 | 121.2 | Major Facilitator Superfamily |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。