Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001427`

染色体: Chr07 坐标: 11095347-11097533 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001427`
名称	SmilChr07G001427
描述	cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	11095347 - 11097533 / `-`

ID 对照

NCBI Gene ID	`LOC130992674`
GeneID	`130992674`
locus_tag	`-`
NCBI Name	`LOC130992674`
原始查询	`LOC130992674`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8-like
产物	cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8-like
Arabidopsis	`AT5G11950` (LOG8) Putative lysine decarboxylase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831068] identity=73.6; qcov=0.873; evalue=2.38e-97; confidence=high
Rice	`Os01g0708500` (LOGL1) - identity=73.6; qcov=0.873; evalue=5.74e-96; confidence=high
GO	GO:0005634 (nucleus); GO:0005829 (cytosol); GO:0009691 (cytokinin biosynthetic process); GO:0016799 (hydrolase activity, hydrolyzing N-glycosyl compounds)
KEGG	-
Pfam	PF03641 (Lysine_decarbox); PF18306 (LDcluster4)
InterPro	-
eggNOG	-
NR	GeneID:130992674

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057773405.1`
2	Nucleus	细胞核	1.00000	`XP_057773407.1`
3	Cytosol	细胞质基质	0.20000	`XP_057773405.1`
4	Chromosome	染色体	0.00000	`XP_057773407.1`
5	Centromere	着丝粒	0.00000	`XP_057773407.1`

进入亚细胞定位查询

EMS 诱变突变

该基因暂未检索到已上线的精选 EMS CDS / LoF 突变，或 EMS 突变库仍在构建。

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773405.1

211 aa

106

211

LDcluster4

Lysine_decarbox

PF18306 LDcluster4 22-137 aa PF03641 Lysine_decarbox 49-179 aa

XP_057773406.1

205 aa

102

205

LDcluster4

Lysine_decarbox

PF18306 LDcluster4 22-137 aa PF03641 Lysine_decarbox 49-179 aa

XP_057773407.1

204 aa

102

204

LDcluster4

Lysine_decarbox

PF18306 LDcluster4 22-137 aa PF03641 Lysine_decarbox 49-179 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773405.1`	Pfam	`PF18306`	LDcluster4	Family	22	137	1.5e-11	44.9	SLOG cluster4 family
`XP_057773405.1`	Pfam	`PF03641`	Lysine_decarbox	Family	49	179	2.1e-45	154.8	Possible lysine decarboxylase
`XP_057773406.1`	Pfam	`PF18306`	LDcluster4	Family	22	137	1.4e-11	45.0	SLOG cluster4 family
`XP_057773406.1`	Pfam	`PF03641`	Lysine_decarbox	Family	49	179	2e-45	154.9	Possible lysine decarboxylase
`XP_057773407.1`	Pfam	`PF18306`	LDcluster4	Family	22	137	1.3e-11	45.1	SLOG cluster4 family
`XP_057773407.1`	Pfam	`PF03641`	Lysine_decarbox	Family	49	179	1.9e-45	154.9	Possible lysine decarboxylase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057917423.1
CTTTCATGCATACAAGTCAATCAAATAGTAGCTACGACTTCCCCCTTTTTTTTTTTTTTTTTTTTTCGAATGAAAAAAATACTATATATATAGATGAGAGGCTGAATAGAAAGATATCGAATGAATCAAGAAAAGATTAATGGTGAAATTCAAGAGGGTTTGCGTCTTCTGTGGAAGTAACTTGGGATATAGGAAGATATTCAGTGATGCAGCTCTTGATCTTGGACAACAACTGGTGAAGAGAAAAATGGAGTTGGTGT...

XM_057917422.1
AATCAAATAGTAGCTACGACTTCCCCCTTTTTTTTTTTTTTTTTTTTTCGAATGAAAAAAATACTATATATATAGATGAGAGGCTGAATAGAAAGATATCGAATGAATCAAGAAAAGATTAATGGTGAAATTCAAGAGGGTTTGCGTCTTCTGTGGAAGTAACTTGGGATATAGGAAGATATTCAGTGATGCAGCTCTTGATCTTGGACAACAACTGGTGAAGAGAAAAATGGAGTTGGTGTACGGCGGAGGAAGCGTTG...

CDS

3 records

下载 CDS FASTA

LOC130992674
ATGGTGAAATTCAAGAGGGTTTGCGTCTTCTGTGGAAGTAACTTGGGATATAGGAAGATATTCAGTGATGCAGCTCTTGATCTTGGACAACAACTGGTGAAGAGAAAAATGGAGTTGGTGTACGGCGGAGGAAGCGTTGGGCTAATGGGTTTGGTGTCGCAGACGGTCTACGATGGCGGCCGCAACGTTCTGGGAGTTATCCCAACTGCTCTTGTCCCTGTCGAGATATCGGGTCACGCCATCGGAGACGTGATGGTGGT...

Protein

3 records

下载 Protein FASTA

XP_057773405.1
MVKFKRVCVFCGSNLGYRKIFSDAALDLGQQLVKRKMELVYGGGSVGLMGLVSQTVYDGGRNVLGVIPTALVPVEISGHAIGDVMVVADMHERKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHNKPVGLLNVDGYYDCLLGIFDKGVEEGFIKHSARNIVIAAKTAAELIEKMENFQLMQGHAPLHAQVAPSRSGNDEDPGTANL

XP_057773406.1
MVKFKRVCVFCGSNLGYRKIFSDAALDLGQQLVKRKMELVYGGGSVGLMGLVSQTVYDGGRNVLGVIPTALVPVEISGHAIGDVMVVADMHERKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHNKPVGLLNVDGYYDCLLGIFDKGVEEGFIKHSARNIVIAAKTAAELIEKMEGHAPLHAQVAPSRSGNDEDPGTANL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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