Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G003415

染色体: Chr01 坐标: 52787901-52790202 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G003415
名称SmilChr01G003415
描述phospholipase A1-IIgamma-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向52787901 - 52790202 / -

ID 对照

NCBI Gene IDLOC130992688
GeneID130992688
locus_tag-
NCBI NameLOC130992688
原始查询LOC130992688

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述phospholipase A1-IIgamma-like
产物phospholipase A1-IIgamma-like
ArabidopsisAT4G18550 (DSEL)
alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827587]
identity=59; qcov=0.959; evalue=7.02e-178; confidence=high
RiceOs05g0574000
-
identity=55; qcov=0.954; evalue=5.15e-143; confidence=high
GOGO:0006629 (lipid metabolic process); GO:0008970 (glycerophospholipid phospholipase A1 activity)
KEGG-
PfamPF01764 (Lipase_3)
InterPro-
eggNOG-
NRGeneID:130992688

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 0.80000 XP_057773425.1
2 Cytoplasm 细胞质 0.60000 XP_057773425.1
3 Nucleus 细胞核 0.00000 XP_057773425.1
4 Chromosome 染色体 0.00000 XP_057773425.1
5 Centromere 着丝粒 0.00000 XP_057773425.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:52789098 G A EMS_canonical_SNV CDS_variant 3 B30,B77,C71

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057773425.1
415 aa
N
1
208
415
Lipase_3
C
PF01764 Lipase_3 155-312 aa
XP_057773430.1
415 aa
N
1
208
415
Lipase_3
C
PF01764 Lipase_3 155-312 aa
XP_057773433.1
415 aa
N
1
208
415
Lipase_3
C
PF01764 Lipase_3 155-312 aa
XP_057773434.1
415 aa
N
1
208
415
Lipase_3
C
PF01764 Lipase_3 155-312 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057773425.1 Pfam PF01764 Lipase_3 Domain 155 312 6.4e-37 127.3 Lipase (class 3)
XP_057773430.1 Pfam PF01764 Lipase_3 Domain 155 312 6.4e-37 127.3 Lipase (class 3)
XP_057773433.1 Pfam PF01764 Lipase_3 Domain 155 312 6.4e-37 127.3 Lipase (class 3)
XP_057773434.1 Pfam PF01764 Lipase_3 Domain 155 312 6.4e-37 127.3 Lipase (class 3)

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057917447.1
AAGCATCATTATTAACAAATTAATTACATAGAATAACTTTTGCTTCTAGGTTTAGATATATTGCCCTTTGAATCCAAGAATCTGAAAACGGAAATCGACACTTCAACCTACTCCACACAACGTTGCCAAAACTGTAAATTGGTAAAAGCAGAATGCTGCATTGCTTCAAGAGAAAGAAAAGAAGGACAGGAAGCACTGAGAAGAAAGCAGCCAGTTCAAGCATTGCCAAGAGATGGAAGATTCTAAGTGGCCTAAACCAT...
XM_057917451.1
TAACAAATTAATTACATAGAATAACTTTTGCTTCTAGGTTTAGATATATTGCCCTTTGAATCCAAGAATCTGAAAACGGAAATCGACACTTCAACCTACTCCACACAACGTTGCCAAAACTAATGCTGCATTGCTTCAAGAGAAAGAAAAGAAGGACAGGAAGCACTGAGAAGAAAGCAGCCAGTTCAAGCATTGCCAAGAGATGGAAGATTCTAAGTGGCCTAAACCATTGGGATGGCCTTCTAGACCCTCTAGACCTC...

CDS

4 records

下载 CDS FASTA
LOC130992688
ATGCTGCATTGCTTCAAGAGAAAGAAAAGAAGGACAGGAAGCACTGAGAAGAAAGCAGCCAGTTCAAGCATTGCCAAGAGATGGAAGATTCTAAGTGGCCTAAACCATTGGGATGGCCTTCTAGACCCTCTAGACCTCGACCTCCGTCGCTACATCATCCACTACGGCCAGATGGCGCAGGCAACCTACGACACGTTCAACTCCGAGAGGGCCTCCAAGTATGCCGGGAGCAGCAGATATGCAAAGGGCAACCTCTTCTC...
LOC130992688
ATGCTGCATTGCTTCAAGAGAAAGAAAAGAAGGACAGGAAGCACTGAGAAGAAAGCAGCCAGTTCAAGCATTGCCAAGAGATGGAAGATTCTAAGTGGCCTAAACCATTGGGATGGCCTTCTAGACCCTCTAGACCTCGACCTCCGTCGCTACATCATCCACTACGGCCAGATGGCGCAGGCAACCTACGACACGTTCAACTCCGAGAGGGCCTCCAAGTATGCCGGGAGCAGCAGATATGCAAAGGGCAACCTCTTCTC...

Protein

4 records

下载 Protein FASTA
XP_057773425.1
MLHCFKRKKRRTGSTEKKAASSSIAKRWKILSGLNHWDGLLDPLDLDLRRYIIHYGQMAQATYDTFNSERASKYAGSSRYAKGNLFSRVGVDKGNPFKYRVTKYFYATSSTQLPDAFIIKSWSREAWSKESNWIGFAAVATDEGKSALGRRDILIAWRGTVMTLEWSNDFEFALVSAPDVFGGDDEVKVHLGWYSIYTSDDPRSPFNKTSARNQVLAEVRRLVEEYKNEEISLTITGHSLGAAVATLNAIDIVTNGYNKP...
XP_057773430.1
MLHCFKRKKRRTGSTEKKAASSSIAKRWKILSGLNHWDGLLDPLDLDLRRYIIHYGQMAQATYDTFNSERASKYAGSSRYAKGNLFSRVGVDKGNPFKYRVTKYFYATSSTQLPDAFIIKSWSREAWSKESNWIGFAAVATDEGKSALGRRDILIAWRGTVMTLEWSNDFEFALVSAPDVFGGDDEVKVHLGWYSIYTSDDPRSPFNKTSARNQVLAEVRRLVEEYKNEEISLTITGHSLGAAVATLNAIDIVTNGYNKP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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