Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003846`

染色体: Chr07 坐标: 47679358-47686252 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003846`
名称	SmilChr07G003846
描述	uncharacterized vacuolar membrane protein YML018C
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	47679358 - 47686252 / `+`

ID 对照

NCBI Gene ID	`LOC130992744`
GeneID	`130992744`
locus_tag	`-`
NCBI Name	`LOC130992744`
原始查询	`LOC130992744`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	EamA-like transporter family [Source:NCBI gene (formerly Entrezgene);Acc:819894]; symbol=AT3G07080; hit=AT3G07080; species=arabidopsis; confidence=high
产物	EamA-like transporter family [Source:NCBI gene (formerly Entrezgene);Acc:819894]; symbol=AT3G07080; hit=AT3G07080; species=arabidopsis; confidence=high
Arabidopsis	`AT3G07080` (AT3G07080) EamA-like transporter family [Source:NCBI gene (formerly Entrezgene);Acc:819894] identity=59.6; qcov=1.1; evalue=3.81e-149; confidence=high
Rice	`Os06g0681700` - identity=57.6; qcov=1.04; evalue=5.55e-128; confidence=high
GO	GO:0016020 (membrane); GO:0022857 (transmembrane transporter activity); GO:0055085 (transmembrane transport); GO:0090087 (regulation of peptide transport)
KEGG	-
Pfam	PF00892 (EamA); PF06027 (SLC35F); PF08449 (UAA); PF16913 (PUNUT)
InterPro	-
eggNOG	-
NR	GeneID:130992744

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	1.00000	`XP_057773465.1`
2	Vacuole membrane	液泡膜	1.00000	`XP_057773465.1`
3	Golgi apparatus	高尔基体	0.20000	`XP_057773463.1`
4	Nucleus	细胞核	0.00000	`XP_057773465.1`
5	Chromosome	染色体	0.00000	`XP_057773465.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:47682663`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B13,B61,B99,C71
`Chr7:47682741`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B106
`Chr7:47685878`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C42
`Chr7:47685884`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B77
`Chr7:47686125`	`T`	`TAC`	2bp_insertion	frameshift_variant	107	A10,A11,A13,A15,A23,A25,A6,B1,B102,B103,B104,B109,B11,B111,B115,B120,B123,B126,B128,B13,B135,B136,B137,B138,B139,B14,B19,B20,B28,B29,B31,B32,B33,B34,B38,B39,B4,B42,B43,B47,B49,B51,B52,B54,B59,B60,B61,B62,B63,B65,B68,B7,B72,B74,B77,B79,B84,B87,B9,B91,B94,B97,B98,B99,C15,C17,C19,C2,C20,C22,C26,C28,C3,C31,C32,C34,C35,C36,C43,C45,C49,C5,C55,C58,C59,C6,C60,C61,C62,C64,C66,C68,C7,C70,C71,C74,C79,C8,C80,C82,C85,C86,C87,D1,D11,D3,D4
`Chr7:47686131`	`AT`	`A`	1bp_deletion	frameshift_variant	26	A5,B1,B105,B106,B124,B126,B131,B17,B2,B40,B46,B53,B60,B62,B71,B8,B80,C12,C33,C39,C47,C48,C58,C60,C62,C78
`Chr7:47686137`	`G`	`GAA`	2bp_insertion	frameshift_variant	12	A11,A24,B112,B121,B124,B129,B46,B71,B98,C16,C46,C48
`Chr7:47686142`	`ACT`	`A`	2bp_deletion	frameshift_variant	12	A11,A24,B112,B121,B124,B129,B46,B71,B98,C16,C46,C48
`Chr7:47686176`	`AG`	`A`	1bp_deletion	frameshift_variant	48	A10,A6,B1,B11,B111,B115,B123,B126,B128,B13,B135,B19,B20,B24,B29,B32,B33,B39,B47,B52,B61,B62,B65,B72,B79,B87,B9,B94,B98,C15,C19,C20,C22,C26,C3,C31,C32,C45,C5,C55,C58,C62,C68,C71,C74,C80,C85,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773463.1

417 aa

208

417

PUNUT

UAA

EamA

SLC35F

PF16913 PUNUT 137-254 aa PF08449 UAA 154-338 aa PF00892 EamA 155-216 aa PF06027 SLC35F 165-292 aa

XP_057773464.1

417 aa

208

417

PUNUT

UAA

EamA

SLC35F

PF16913 PUNUT 137-254 aa PF08449 UAA 154-338 aa PF00892 EamA 155-216 aa PF06027 SLC35F 165-292 aa

XP_057773465.1

409 aa

204

409

PUNUT

UAA

EamA

SLC35F

EamA

PF16913 PUNUT 137-254 aa PF08449 UAA 154-339 aa PF00892 EamA 155-216 aa PF06027 SLC35F 165-292 aa PF00892 EamA 233-377 aa

XP_057773467.1

409 aa

204

409

PUNUT

UAA

EamA

SLC35F

EamA

PF16913 PUNUT 137-254 aa PF08449 UAA 154-339 aa PF00892 EamA 155-216 aa PF06027 SLC35F 165-292 aa PF00892 EamA 233-377 aa

XP_057773468.1

391 aa

196

391

SLC35F

PF06027 SLC35F 151-266 aa

XP_057773469.1

383 aa

192

383

SLC35F

EamA

PF06027 SLC35F 151-266 aa PF00892 EamA 207-351 aa

XP_057773470.1

383 aa

192

383

SLC35F

EamA

PF06027 SLC35F 151-266 aa PF00892 EamA 207-351 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773463.1`	Pfam	`PF16913`	PUNUT	Family	137	254	1.4e-08	35.1	Purine nucleobase transmembrane transport
`XP_057773463.1`	Pfam	`PF08449`	UAA	Family	154	338	6e-07	29.6	UAA transporter family
`XP_057773463.1`	Pfam	`PF00892`	EamA	Domain	155	216	4.6e-14	53.6	EamA-like transporter family
`XP_057773463.1`	Pfam	`PF06027`	SLC35F	Family	165	292	2.9e-11	44.2	Solute carrier family 35
`XP_057773464.1`	Pfam	`PF16913`	PUNUT	Family	137	254	1.4e-08	35.1	Purine nucleobase transmembrane transport
`XP_057773464.1`	Pfam	`PF08449`	UAA	Family	154	338	6e-07	29.6	UAA transporter family
`XP_057773464.1`	Pfam	`PF00892`	EamA	Domain	155	216	4.6e-14	53.6	EamA-like transporter family
`XP_057773464.1`	Pfam	`PF06027`	SLC35F	Family	165	292	2.9e-11	44.2	Solute carrier family 35
`XP_057773465.1`	Pfam	`PF16913`	PUNUT	Family	137	254	6.1e-09	36.3	Purine nucleobase transmembrane transport
`XP_057773465.1`	Pfam	`PF08449`	UAA	Family	154	339	2.8e-07	30.7	UAA transporter family
`XP_057773465.1`	Pfam	`PF00892`	EamA	Domain	155	216	1.7e-17	64.7	EamA-like transporter family
`XP_057773465.1`	Pfam	`PF06027`	SLC35F	Family	165	292	2.8e-11	44.2	Solute carrier family 35
`XP_057773465.1`	Pfam	`PF00892`	EamA	Domain	233	377	1.7e-17	64.7	EamA-like transporter family
`XP_057773467.1`	Pfam	`PF16913`	PUNUT	Family	137	254	6.1e-09	36.3	Purine nucleobase transmembrane transport
`XP_057773467.1`	Pfam	`PF08449`	UAA	Family	154	339	2.8e-07	30.7	UAA transporter family
`XP_057773467.1`	Pfam	`PF00892`	EamA	Domain	155	216	1.7e-17	64.7	EamA-like transporter family
`XP_057773467.1`	Pfam	`PF06027`	SLC35F	Family	165	292	2.8e-11	44.2	Solute carrier family 35
`XP_057773467.1`	Pfam	`PF00892`	EamA	Domain	233	377	1.7e-17	64.7	EamA-like transporter family
`XP_057773468.1`	Pfam	`PF06027`	SLC35F	Family	151	266	8.7e-09	36.0	Solute carrier family 35
`XP_057773469.1`	Pfam	`PF06027`	SLC35F	Family	151	266	1e-08	35.8	Solute carrier family 35
`XP_057773469.1`	Pfam	`PF00892`	EamA	Domain	207	351	2.5e-12	47.9	EamA-like transporter family
`XP_057773470.1`	Pfam	`PF06027`	SLC35F	Family	151	266	1e-08	35.8	Solute carrier family 35
`XP_057773470.1`	Pfam	`PF00892`	EamA	Domain	207	351	2.5e-12	47.9	EamA-like transporter family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057917484.1
AAATAGAATACATGAAAAAAAAGGAAAAAACGAAAAAGGAAAAAGAAAAGGAAAGGAGTTAAATTTTTTGTTATTTTCTCTCTCCTTAAACAAACTCAGCCATTCGTCTCTCTCGCTCGCACACAGCTGCCATAGCAGCAGTTTCTCCAAGCTTTCAAGTTCGATTCCAGGCCCAAGTTTCTGTCTGATTTCAATTTCAAATTCGTATCGAGATTCCGGCAAGAAAACACGTTTTCTATTGGGATTGGTATCAACTGCAG...

XM_057917485.1
AACGAAAAAGGAAAAAGAAAAGGAAAGGAGTTAAATTTTTTGTTATTTTCTCTCTCCTTAAACAAACTCAGCCATTCGTCTCTCTCGCTCGCACACAGCTGCCATAGCAGCAGTTTCTCCAAGCTTTCAAGTTCGATTCCAGGCCCAAGTTTCTGTCTGATTTCAATTTCAAATTCGTATCGAGATTCCGGCAAGAAAACACGTTTTCTATTGGGATTGGTATCAACTGCAGTTTTCTTCTTCATTGATTGGATAGAGAT...

CDS

7 records

下载 CDS FASTA

LOC130992744
ATGAGAGATCAAGTGTGGAGATGGGTTTTAGGGTTGGTTTACATATTTACAGTTGCAACAATATGGATCGCAGCTAGTTTCATTGTACAGTCAGTTGTAGATGAGGGCGTCTCGCCGTTTCTGGTAACCTACATTTGCAATTCATTATTCGTGGTGTATATACCTTTAGTAGAAATTGGGCGGTATTTGGAGGATAGGAATGTAAGCATTTTCTTTTGGTTAAATAAGAGAAATGATGATGCTGCGTTGCAAGACTCTAA...

Protein

7 records

下载 Protein FASTA

XP_057773463.1
MRDQVWRWVLGLVYIFTVATIWIAASFIVQSVVDEGVSPFLVTYICNSLFVVYIPLVEIGRYLEDRNVSIFFWLNKRNDDAALQDSKVSEEAILLHNNEAGAIENELNPDEQEVVDHGEVEVDLKQCGVGKDLDEKGRWMRWRIAKVSILICPIWFMAQLTFNLSLKYTTVTSNTILSSASSLFTFVVAVVFLGEKFTWLKLISVLLCMGGVIIVSLGDSGSGSSEVAPNPALGDILSLLSAAFYSVYITLIRQKLPDED...

XP_057773464.1
MRDQVWRWVLGLVYIFTVATIWIAASFIVQSVVDEGVSPFLVTYICNSLFVVYIPLVEIGRYLEDRNVSIFFWLNKRNDDAALQDSKVSEEAILLHNNEAGAIENELNPDEQEVVDHGEVEVDLKQCGVGKDLDEKGRWMRWRIAKVSILICPIWFMAQLTFNLSLKYTTVTSNTILSSASSLFTFVVAVVFLGEKFTWLKLISVLLCMGGVIIVSLGDSGSGSSEVAPNPALGDILSLLSAAFYSVYITLIRQKLPDED...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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