Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G003852

染色体: Chr07 坐标: 47758976-47763112 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G003852
名称SmilChr07G003852
描述FAM10 family protein At4g22670
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向47758976 - 47763112 / -

ID 对照

NCBI Gene IDLOC130992745
GeneID130992745
locus_tag-
NCBI NameLOC130992745
原始查询LOC130992745

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述FAM10 family protein At4g22670
产物FAM10 family protein At4g22670
ArabidopsisAT4G22670 (HIP1)
HSP70-interacting protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:828363]
identity=71; qcov=0.69; evalue=1.87e-133; confidence=high
RiceOs02g0100300 (OsHSP40)
-
identity=59.1; qcov=1.04; evalue=3.27e-152; confidence=high
GOGO:0030544 (Hsp70 protein binding); GO:0046983 (protein dimerization activity); GO:0051085 (GO:0051085)
KEGG-
PfamPF13181 (TPR_8); PF17830 (STI1-HOP_DP); PF18253 (HipN)
InterPro-
eggNOG-
NRGeneID:130992745

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057773471.1
2 Cytoplasm 细胞质 1.00000 XP_057773471.1
3 Cytosol 细胞质基质 0.60000 XP_057773471.1
4 Chromosome 染色体 0.00000 XP_057773471.1
5 Centromere 着丝粒 0.00000 XP_057773471.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:47760367 G A EMS_canonical_SNV CDS_variant 1 B14
Chr7:47760729 C T EMS_canonical_SNV CDS_variant 1 B72
Chr7:47760824 CTT C 2bp_deletion frameshift_variant 1 C78
Chr7:47760824 CTT C 2bp_deletion CDS_variant 1 C78
Chr7:47760992 T TG 1bp_insertion frameshift_variant 1 C36
Chr7:47760992 T TG 1bp_insertion CDS_variant 1 C36
Chr7:47761014 C T EMS_canonical_SNV CDS_variant 2 B61,C12
Chr7:47761927 C T EMS_canonical_SNV CDS_variant 1 D10
Chr7:47762823 CG C 1bp_deletion frameshift_variant 26 A19,A4,B108,B124,B125,B127,B16,B19,B21,B26,B4,B47,B59,B73,B74,B78,C18,C20,C27,C28,C44,C54,C56,C74,C76,C78

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057773471.1
410 aa
N
1
205
410
HipN
TPR_8
TPR_8
STI1-HOP_DP
C
PF18253 HipN 2-43 aa PF13181 TPR_8 130-151 aa PF13181 TPR_8 155-185 aa PF17830 STI1-HOP_DP 354-404 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057773471.1 Pfam PF18253 HipN Domain 2 43 9e-19 67.6 Hsp70-interacting protein N N-terminal domain
XP_057773471.1 Pfam PF13181 TPR_8 Repeat 130 151 1.8e-08 34.6 Tetratricopeptide repeat
XP_057773471.1 Pfam PF13181 TPR_8 Repeat 155 185 1.8e-08 34.6 Tetratricopeptide repeat
XP_057773471.1 Pfam PF17830 STI1-HOP_DP Domain 354 404 2.5e-13 50.4 STI1/HOP, DP domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057917488.1
ATAGATAGATGTGAGACAAGCCCTAGTATGATTATCCAAAACCGAAACTAAAGAAGCTTCTAGTAGCCCCGTTCAATAGGAAAGTCATTCAGTTTCCTTACTCTTGAGTCTTGACATTCAGACTCCCACCCCCCTCTCAATTTCTACACACTAAAACTAATTTTTATTCAAGTAGCTGCACAAAGTAGTTCTGTAATGGATGCATCAAAGCTGAATCAGCTGAAGCAATTCATCGAACAGTGCAAGACAAATCCGTCCAT...

CDS

1 records

下载 CDS FASTA
LOC130992745
ATGGATGCATCAAAGCTGAATCAGCTGAAGCAATTCATCGAACAGTGCAAGACAAATCCGTCCATGCTCTCCGATCCATCTCTCTCTTTTTTCCGGGAATACGTTGAGAGTCTTGGAGGCGAGATTCCGTCGTCTGCAGGGGCTTCTAAAGCGAAGTCTCATGTGGTACATGAGAGTGATGAGGATATGGACAACATTGAGGATGAGACTCAGCCACCTCAGGAAGAAGATGAGCCTGAGATAGTTGAATCCGATATTGA...

Protein

1 records

下载 Protein FASTA
XP_057773471.1
MDASKLNQLKQFIEQCKTNPSMLSDPSLSFFREYVESLGGEIPSSAGASKAKSHVVHESDEDMDNIEDETQPPQEEDEPEIVESDIELDDSDVVEPDNDPPQKMGDPSVEVTEENRDASQEAKMQAIEAISEGKHDEAVESLTRAIMLNPTSAIMYATRASVYIKMKKPNAAIRDASAALEINPDSAKGYKSRGIAQAMLGKWEEAAKDLHLASKLDYDEEISAVLKKVEPNAHKIEEHRRKYDRLRKEREDRKIERERQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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