Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003853`

染色体: Chr07 坐标: 47815951-47824199 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003853`
名称	SmilChr07G003853
描述	calcineurin B-like protein 9
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	47815951 - 47824199 / `+`

ID 对照

NCBI Gene ID	`LOC130992749`
GeneID	`130992749`
locus_tag	`-`
NCBI Name	`LOC130992749`
原始查询	`LOC130992749`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	calcineurin B-like protein 9
产物	calcineurin B-like protein 9
Arabidopsis	`AT5G47100` (CBL9) calcineurin B-like protein 9 [Source:NCBI gene (formerly Entrezgene);Acc:834756] identity=82.5; qcov=0.894; evalue=2.89e-97; confidence=high
Rice	`Os10g0564800` (CBL1) - identity=76.2; qcov=0.894; evalue=2.52e-91; confidence=high
GO	GO:0005509 (calcium ion binding); GO:0019722 (calcium-mediated signaling); GO:0019900 (kinase binding)
KEGG	-
Pfam	PF13202 (EF-hand_5); PF13405 (EF-hand_6); PF13499 (EF-hand_7); PF13833 (EF-hand_8)
InterPro	-
eggNOG	-
NR	GeneID:130992749

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057773476.1`
2	Cell membrane	细胞膜	0.40000	`XP_057773477.1`
3	Nucleus	细胞核	0.00000	`XP_057773476.1`
4	Chromosome	染色体	0.00000	`XP_057773476.1`
5	Centromere	着丝粒	0.00000	`XP_057773476.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:47822848`	`GC`	`G`	1bp_deletion	frameshift_variant	1	A2
`Chr7:47822848`	`GC`	`G`	1bp_deletion	CDS_variant	1	A2
`Chr7:47822870`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr7:47822918`	`CT`	`C`	1bp_deletion	frameshift_variant	1	A2
`Chr7:47822918`	`CT`	`C`	1bp_deletion	CDS_variant	1	A2
`Chr7:47822924`	`TC`	`T`	1bp_deletion	frameshift_variant	9	A4,B113,B95,C29,C54,C56,C57,D1,D9
`Chr7:47822930`	`TTA`	`T`	2bp_deletion	frameshift_variant	14	A10,B108,B135,B33,B40,B42,B43,B44,B51,C3,C42,C70,C84,D2
`Chr7:47822955`	`CTT`	`C`	2bp_deletion	frameshift_variant	1	B121
`Chr7:47822955`	`CTT`	`C`	2bp_deletion	CDS_variant	1	B121

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773476.1

215 aa

108

215

EF-hand_7

EF-hand_6

PF13499 EF-hand_7 107-156 aa PF13405 EF-hand_6 112-135 aa

XP_057773477.1

213 aa

106

213

EF-hand_8

EF-hand_7

EF-hand_6

EF-hand_5

EF-hand_8

PF13833 EF-hand_8 49-96 aa PF13833 EF-hand_8 83-133 aa PF13499 EF-hand_7 107-172 aa PF13405 EF-hand_6 112-135 aa PF13202 EF-hand_5 153-177 aa PF13833 EF-hand_8 157-179 aa

XP_057773478.1

213 aa

106

213

EF-hand_8

EF-hand_7

EF-hand_6

EF-hand_5

EF-hand_8

PF13833 EF-hand_8 49-96 aa PF13833 EF-hand_8 83-133 aa PF13499 EF-hand_7 107-172 aa PF13405 EF-hand_6 112-135 aa PF13202 EF-hand_5 153-177 aa PF13833 EF-hand_8 157-179 aa

XP_057773479.1

179 aa

179

EF-hand_8

EF-hand_7

EF-hand_6

EF-hand_5

EF-hand_8

PF13833 EF-hand_8 49-99 aa PF13499 EF-hand_7 73-138 aa PF13405 EF-hand_6 78-101 aa PF13202 EF-hand_5 119-143 aa PF13833 EF-hand_8 123-145 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773476.1`	Pfam	`PF13499`	EF-hand_7	Domain	107	156	3.3e-11	44.1	EF-hand domain pair
`XP_057773476.1`	Pfam	`PF13405`	EF-hand_6	Domain	112	135	7.8e-12	44.5	EF-hand domain
`XP_057773477.1`	Pfam	`PF13833`	EF-hand_8	Domain	49	96	7.8e-09	35.9	EF-hand domain pair
`XP_057773477.1`	Pfam	`PF13833`	EF-hand_8	Domain	83	133	7.8e-09	35.9	EF-hand domain pair
`XP_057773477.1`	Pfam	`PF13499`	EF-hand_7	Domain	107	172	1.6e-13	51.5	EF-hand domain pair
`XP_057773477.1`	Pfam	`PF13405`	EF-hand_6	Domain	112	135	9.4e-16	56.7	EF-hand domain
`XP_057773477.1`	Pfam	`PF13202`	EF-hand_5	Domain	153	177	5e-15	54.9	EF hand
`XP_057773477.1`	Pfam	`PF13833`	EF-hand_8	Domain	157	179	7.8e-09	35.9	EF-hand domain pair
`XP_057773478.1`	Pfam	`PF13833`	EF-hand_8	Domain	49	96	7.8e-09	35.9	EF-hand domain pair
`XP_057773478.1`	Pfam	`PF13833`	EF-hand_8	Domain	83	133	7.8e-09	35.9	EF-hand domain pair
`XP_057773478.1`	Pfam	`PF13499`	EF-hand_7	Domain	107	172	1.6e-13	51.5	EF-hand domain pair
`XP_057773478.1`	Pfam	`PF13405`	EF-hand_6	Domain	112	135	9.4e-16	56.7	EF-hand domain
`XP_057773478.1`	Pfam	`PF13202`	EF-hand_5	Domain	153	177	5e-15	54.9	EF hand
`XP_057773478.1`	Pfam	`PF13833`	EF-hand_8	Domain	157	179	7.8e-09	35.9	EF-hand domain pair
`XP_057773479.1`	Pfam	`PF13833`	EF-hand_8	Domain	49	99	2.3e-08	34.4	EF-hand domain pair
`XP_057773479.1`	Pfam	`PF13499`	EF-hand_7	Domain	73	138	1.5e-13	51.6	EF-hand domain pair
`XP_057773479.1`	Pfam	`PF13405`	EF-hand_6	Domain	78	101	1.1e-14	53.4	EF-hand domain
`XP_057773479.1`	Pfam	`PF13202`	EF-hand_5	Domain	119	143	4.6e-13	48.7	EF hand
`XP_057773479.1`	Pfam	`PF13833`	EF-hand_8	Domain	123	145	2.3e-08	34.4	EF-hand domain pair

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009091381.1
GCTCCTCACCCGCGCGTCCTCTCCACTCCCCCTACCTTTCCTGTTCCATGTCTACTTTCTTCTGCTGCTTTTCCGTCATTGGTTCCCTCTCCAACAAATCCAAAACCACTTTTTAGACAATGAATTTCTCAATACCTACAAATTGATGTGCGTATCGCCTCTCAAGAGCTCACACTTTTAGGACTCGATCCCGTTTCGCCGATTCGTTTCCATTTTGTCGTATTGTGGGGATTTATTCCCTCAGATGGGCTGTTTTCATT...

XM_057917494.1
TGATCTGGTGTCATAATTGACCCATTTTCAAAGTAGAATATTCGACACCCTTAACTTTAATATCCGTTCGCCACGCTCCTCACCCGCGCGTCCTCTCCACTCCCCCTACCTTTCCTGTTCCATGTCTACTTTCTTCTGCTGCTTTTCCGTCATTGGTTCCCTCTCCAACAAATCCAAAACCACTTTTTAGACAATGAATTTCTCAATACCTACAAATTGATGTGCGTATCGCCTCTCAAGAGCTCACACTTTTAGGACTC...

CDS

4 records

下载 CDS FASTA

LOC130992749
ATGGGCTGTTTTCATTCTACAACAAGAAAGCAGTTTCCTGGACATGAAGACCCTGTTTTACTTGCTTCCCAAACGGCTTTTAGTGTGAGTGAGGTTGAAGCATTATTTGAGCTGTTTAAGAGCATTAGCAGTTCCGTTATTGATGATGGGCTTATTAGTAAGGAAGAACTTCAATTGGCTTTGTTCAAGAATAGGAAAAAGGAGAATCTTTTCTCAAATCGGATTTTTGATCTATTCGATGTGAAGCAAAAAGGTGTAAT...

Protein

4 records

下载 Protein FASTA

XP_057773476.1
MGCFHSTTRKQFPGHEDPVLLASQTAFSVSEVEALFELFKSISSSVIDDGLISKEELQLALFKNRKKENLFSNRIFDLFDVKQKGVIDFGDFVRSLNVFHPNAPQDDKINFSFKLYDLDGTGYIERQEVKQMLIALLCESEMKLADETIEVILDKVSGVAHNLHKFIDVLMLPMLHCTHPHDFNVTFDTPSVHDKCGLFSVLVHPQKLLSFYFST

XP_057773477.1
MGCFHSTTRKQFPGHEDPVLLASQTAFSVSEVEALFELFKSISSSVIDDGLISKEELQLALFKNRKKENLFSNRIFDLFDVKQKGVIDFGDFVRSLNVFHPNAPQDDKINFSFKLYDLDGTGYIERQEVKQMLIALLCESEMKLADETIEVILDKTFLEADMDRDGKIDKSEWHNFVARNPSLMRIMTLPYLRDITTTFPSFVFNSEVDEVAT

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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