Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003754`

染色体: Chr07 坐标: 45703739-45712814 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003754`
名称	SmilChr07G003754
描述	ribose-phosphate pyrophosphokinase 1-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	45703739 - 45712814 / `-`

ID 对照

NCBI Gene ID	`LOC130992770`
GeneID	`130992770`
locus_tag	`-`
NCBI Name	`LOC130992770`
原始查询	`LOC130992770`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ribose-phosphate pyrophosphokinase 1-like
产物	ribose-phosphate pyrophosphokinase 1-like
Arabidopsis	`AT2G35390` (AT2G35390) Phosphoribosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:818106] identity=78.1; qcov=0.807; evalue=5.26e-146; confidence=high
Rice	`Os02g0127700` - identity=78.7; qcov=0.789; evalue=1.77e-133; confidence=high
GO	GO:0000287 (magnesium ion binding); GO:0002189 (ribose phosphate diphosphokinase complex); GO:0004749 (ribose phosphate diphosphokinase activity); GO:0005737 (cytoplasm); GO:0006015 (5-phosphoribose 1-diphosphate biosynthetic process); GO:0006164 (purine nucleotide biosynthetic process); GO:0009156 (ribonucleoside monophosphate biosynthetic process)
KEGG	smil00030 (Pentose phosphate pathway - Salvia miltiorrhiza (redroot sage)); smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF00156 (Pribosyltran); PF13793 (Pribosyltran_N); PF14572 (Pribosyl_synth)
InterPro	-
eggNOG	-
NR	GeneID:130992770

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057773494.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057773494.1`
3	Nucleus	细胞核	0.00000	`XP_057773494.1`
4	Chromosome	染色体	0.00000	`XP_057773494.1`
5	Centromere	着丝粒	0.00000	`XP_057773494.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:45708426`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C26
`Chr7:45708968`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr7:45708976`	`G`	`A`	EMS_canonical_SNV	stop_gained	38	A1,A11,A19,A21,A22,B101,B106,B110,B117,B125,B129,B130,B137,B139,B20,B26,B3,B4,B41,B45,B47,B48,B57,B58,B70,B75,B78,B89,C2,C24,C32,C51,C52,C68,C75,C9,D10,D5
`Chr7:45709046`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B111,C60,D4
`Chr7:45712116`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B127,B13,B84,C49,C79
`Chr7:45712237`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:45712238`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C54
`Chr7:45712591`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773494.1

395 aa

198

395

Pribosyltran_N

Pribosyltran

Pribosyl_synth

PF13793 Pribosyltran_N 80-196 aa PF00156 Pribosyltran 239-327 aa PF14572 Pribosyl_synth 281-386 aa

XP_057773495.1

322 aa

161

322

Pribosyltran_N

PF13793 Pribosyltran_N 80-196 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773494.1`	Pfam	`PF13793`	Pribosyltran_N	Domain	80	196	3.8e-52	175.8	N-terminal domain of ribose phosphate pyrophosphokinase
`XP_057773494.1`	Pfam	`PF00156`	Pribosyltran	Domain	239	327	1.5e-17	64.1	Phosphoribosyl transferase domain
`XP_057773494.1`	Pfam	`PF14572`	Pribosyl_synth	Domain	281	386	8e-24	85.3	Phosphoribosyl synthetase-associated domain
`XP_057773495.1`	Pfam	`PF13793`	Pribosyltran_N	Domain	80	196	2.8e-52	176.2	N-terminal domain of ribose phosphate pyrophosphokinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057917511.1
AAGTTTAGTGGGAATTTGAGGAGCGGTGGTGAGTCGTCACCCACCGCAACGAAATCCGCAAGAGCTTCCCTCTACCAAAAATAAATAAAGAGGCGCCATACAAACATTTCACAAATACACACACCTCCTCTCCCCTCCTTTCATGGCGTCTTTGCTCTTGCCTCCGCCAACCTCTTCTTCCGCCGCTTCTTCTCTTTTCTCGCGCTTCGCCTTTCCCACCCCCACCGCACGCTTCTCTGCGTCCAATGCCGTCAGATGTG...

XM_057917512.1
GAAGTTTAGTGGGAATTTGAGGAGCGGTGGTGAGTCGTCACCCACCGCAACGAAATCCGCAAGAGCTTCCCTCTACCAAAAATAAATAAAGAGGCGCCATACAAACATTTCACAAATACACACACCTCCTCTCCCCTCCTTTCATGGCGTCTTTGCTCTTGCCTCCGCCAACCTCTTCTTCCGCCGCTTCTTCTCTTTTCTCGCGCTTCGCCTTTCCCACCCCCACCGCACGCTTCTCTGCGTCCAATGCCGTCAGATGT...

CDS

2 records

下载 CDS FASTA

LOC130992770
ATGGCGTCTTTGCTCTTGCCTCCGCCAACCTCTTCTTCCGCCGCTTCTTCTCTTTTCTCGCGCTTCGCCTTTCCCACCCCCACCGCACGCTTCTCTGCGTCCAATGCCGTCAGATGTGAGTTGATAGAGCCGGTGAACGGGAAGCCTTGTGTTCCTGTTCTCAACGATCAGTTACTGCCCAAGTACTTGCAATCGAGACGATTGGAGAATGTGGTGAACAAAAATAGTAATAACAGGATCAAGATATTCTCCGGTACCGC...

Protein

2 records

下载 Protein FASTA

XP_057773494.1
MASLLLPPPTSSSAASSLFSRFAFPTPTARFSASNAVRCELIEPVNGKPCVPVLNDQLLPKYLQSRRLENVVNKNSNNRIKIFSGTANFTLSQEIARYMGLNLGNILIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDIHSGQSMGYFDIPVDHVYCQPVILDYLASKKICSGDLVVVSPDVGGVARARAFAKK...

XP_057773495.1
MASLLLPPPTSSSAASSLFSRFAFPTPTARFSASNAVRCELIEPVNGKPCVPVLNDQLLPKYLQSRRLENVVNKNSNNRIKIFSGTANFTLSQEIARYMGLNLGNILIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDIHSGQSMGYFDIPVDHVYCQPVILDYLASKKICSGDLVVVSPDVGGVARARAFAKK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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