Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003759`

染色体: Chr07 坐标: 45899592-45903964 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003759`
名称	SmilChr07G003759
描述	probable methyltransferase PMT14
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	45899592 - 45903964 / `+`

ID 对照

NCBI Gene ID	`LOC130992774`
GeneID	`130992774`
locus_tag	`-`
NCBI Name	`LOC130992774`
原始查询	`LOC130992774`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable methyltransferase PMT14
产物	probable methyltransferase PMT14
Arabidopsis	`AT4G18030` (AT4G18030) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827528] identity=74; qcov=0.972; evalue=0; confidence=high
Rice	`Os03g0379100` - identity=68.9; qcov=0.992; evalue=0; confidence=high
GO	GO:0005737 (cytoplasm); GO:0005768 (endosome); GO:0005802 (trans-Golgi network); GO:0008168 (methyltransferase activity)
KEGG	-
Pfam	PF03141 (Methyltransf_29); PF08241 (Methyltransf_11); PF13649 (Methyltransf_25)
InterPro	-
eggNOG	-
NR	GeneID:130992774

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057773509.1`
2	Nucleus	细胞核	0.00000	`XP_057773509.1`
3	Chromosome	染色体	0.00000	`XP_057773509.1`
4	Centromere	着丝粒	0.00000	`XP_057773509.1`
5	Chromatin	染色质	0.00000	`XP_057773509.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:45900713`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr7:45901021`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C41
`Chr7:45901453`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B37,B44,B69,C5
`Chr7:45901520`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr7:45901572`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr7:45902675`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B11,B114,B17,B73,C30
`Chr7:45902783`	`G`	`GA`	1bp_insertion	frameshift_variant	7	B115,B13,B77,C1,C43,C58,C87
`Chr7:45902785`	`TA`	`T`	1bp_deletion	frameshift_variant	7	B115,B13,B77,C1,C43,C58,C87
`Chr7:45902789`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr7:45902802`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A20,C54
`Chr7:45902810`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C9
`Chr7:45902848`	`CT`	`C`	1bp_deletion	frameshift_variant	1	B87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773509.1

613 aa

306

613

Methyltransf_29

Methyltransf_25

Methyltransf_11

PF03141 Methyltransf_29 93-598 aa PF13649 Methyltransf_25 210-301 aa PF08241 Methyltransf_11 210-304 aa

XP_057773510.1

613 aa

306

613

Methyltransf_29

Methyltransf_25

Methyltransf_11

PF03141 Methyltransf_29 93-598 aa PF13649 Methyltransf_25 210-301 aa PF08241 Methyltransf_11 210-304 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773509.1`	Pfam	`PF03141`	Methyltransf_29	Family	93	598	1.3e-225	750.5	Putative S-adenosyl-L-methionine-dependent methyltransferase
`XP_057773509.1`	Pfam	`PF13649`	Methyltransf_25	Domain	210	301	3.8e-09	37.8	Methyltransferase domain
`XP_057773509.1`	Pfam	`PF08241`	Methyltransf_11	Domain	210	304	8.2e-11	43.1	Methyltransferase domain
`XP_057773510.1`	Pfam	`PF03141`	Methyltransf_29	Family	93	598	1.3e-225	750.5	Putative S-adenosyl-L-methionine-dependent methyltransferase
`XP_057773510.1`	Pfam	`PF13649`	Methyltransf_25	Domain	210	301	3.8e-09	37.8	Methyltransferase domain
`XP_057773510.1`	Pfam	`PF08241`	Methyltransf_11	Domain	210	304	8.2e-11	43.1	Methyltransferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057917526.1
GTCGGTGAGTTTAAAATATTAGAAAAAAATTTCAAATCTTGAAAATGAATGGTGAGTCTGTGGCACCACCATCTCAGTCTGCCCCACAGACCGCCAATTCAGTGCTCTACTTAACAAGGTAGTAGTGTCCCTACGTCCCTCTCTGTAATCGCACTACTTCACTTCATTTTTCTTTCCCACTCTCACTGTGTGTGTGTGTGTTTATACTAATCACTTTCTCAACTTCAGCTTATAACTTAAGAGAGAGAAAGAGAGAGAGG...

XM_057917527.1
TGAGTTTAAAATATTAGAAAAAAATTTCAAATCTTGAAAATGAATGGTGAGTCTGTGGCACCACCATCTCAGTCTGCCCCACAGACCGCCAATTCAGTGCTCTACTTAACAAGCTTATAACTTAAGAGAGAGAAAGAGAGAGAGGGAGAGCTTTCCTTTGTTCTCAGGTATTAGGGAGTTTCTTGATGCTGTCTTGAGCAAAAATATGGCACCAAAGGTTCATTCTTCGGGCAATAAAGGGAGAAGTCGGATTTCCATAT...

CDS

2 records

下载 CDS FASTA

LOC130992774
ATGGCACCAAAGGTTCATTCTTCGGGCAATAAAGGGAGAAGTCGGATTTCCATATTCGTTATCATAGCTCTCTGTTGTTTCTTTTACTTGTTGGGAGTGTGGCAGAGGAGTGGCTTTGGTAAAGGCGATGGTTATGCTATAGAGATGAATAAGCAGCAGGCAAACTGCAATGTCTCTCCGTCTCTGGACTTCGAGAGCCATCATAAGTATGTGGCTTCTATTGAATCATCCGAGCCCAAAGCCAAAGTCTTCGAGCCATG...

Protein

2 records

下载 Protein FASTA

XP_057773509.1
MAPKVHSSGNKGRSRISIFVIIALCCFFYLLGVWQRSGFGKGDGYAIEMNKQQANCNVSPSLDFESHHKYVASIESSEPKAKVFEPCDARFTDYTPCQEQDRAMKFPRENMIYRERHCPPEEEKLRCLIPAPNGYTSPFPWPKSRDYVYYSNVPFKSLTVEKANQNWVEYQGNVFKFPGGGTMFPQGANAYIDELARVIPIADGTVRTALDTGCGVASWGAYMLKRNVLTMSFAPRDNHEAQVQFALERGVPAFIGVLGS...

XP_057773510.1
MAPKVHSSGNKGRSRISIFVIIALCCFFYLLGVWQRSGFGKGDGYAIEMNKQQANCNVSPSLDFESHHKYVASIESSEPKAKVFEPCDARFTDYTPCQEQDRAMKFPRENMIYRERHCPPEEEKLRCLIPAPNGYTSPFPWPKSRDYVYYSNVPFKSLTVEKANQNWVEYQGNVFKFPGGGTMFPQGANAYIDELARVIPIADGTVRTALDTGCGVASWGAYMLKRNVLTMSFAPRDNHEAQVQFALERGVPAFIGVLGS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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