当前解析结果
SmilChr07G003761| 统一新 Gene ID | SmilChr07G003761 |
|---|---|
| 名称 | SmilChr07G003761 |
| 描述 | protein ABA AND ROS SENSITIVE 1 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 45938817 - 45945151 / + |
| NCBI Gene ID | LOC130992775 |
|---|---|
| GeneID | 130992775 |
| locus_tag | - |
| NCBI Name | LOC130992775 |
| 原始查询 | LOC130992775 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein ABA AND ROS SENSITIVE 1 |
| 产物 | protein ABA AND ROS SENSITIVE 1 |
| Arabidopsis | AT3G02860 (AT3G02860)zinc ion binding protein [Source:NCBI gene (formerly Entrezgene);Acc:821212] identity=48.8; qcov=1.01; evalue=3.07e-79; confidence=high |
| Rice | Os05g0495100- identity=38.2; qcov=1.15; evalue=4.61e-52; confidence=medium |
| GO | GO:0003676 (nucleic acid binding); GO:0005634 (nucleus); GO:0005681 (spliceosomal complex); GO:0008270 (zinc ion binding); GO:0033260 (nuclear DNA replication); GO:0033314 (mitotic DNA replication checkpoint signaling); GO:0044773 (mitotic DNA damage checkpoint signaling) |
| KEGG | - |
| Pfam | PF12874 (zf-met); PF23406 (ZNF380_CC) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992775 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057773511.1 |
| 2 | Nucleoplasm | 核质 | 0.60000 | XP_057773511.1 |
| 3 | Nuclear speckle | 核斑点 | 0.20000 | XP_057773511.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057773511.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057773511.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:45939156 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr7:45940800 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C27,C63 |
Chr7:45940852 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr7:45940892 |
A |
ATG |
2bp_insertion | frameshift_variant | 1 | B120 |
Chr7:45940892 |
A |
ATG |
2bp_insertion | CDS_variant | 1 | B120 |
Chr7:45944441 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr7:45944602 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:45944865 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B111,B27,B57 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057773511.1PF12874
zf-met 39-62 aa
PF23406
ZNF380_CC 208-287 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773511.1 |
Pfam | PF12874 |
zf-met | Domain | 39 | 62 | 1.4e-05 | 25.9 | Zinc-finger of C2H2 type |
XP_057773511.1 |
Pfam | PF23406 |
ZNF380_CC | Coiled-coil | 208 | 287 | 2.9e-06 | 28.4 | ZNF380 coiled-coil |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。