Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003809`

染色体: Chr07 坐标: 46934050-46945178 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003809`
名称	SmilChr07G003809
描述	chaperone protein dnaJ 13
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	46934050 - 46945178 / `-`

ID 对照

NCBI Gene ID	`LOC130992810`
GeneID	`130992810`
locus_tag	`-`
NCBI Name	`LOC130992810`
原始查询	`LOC130992810`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	chaperone protein dnaJ 13
产物	chaperone protein dnaJ 13
Arabidopsis	`AT2G35720` (OWL1) DNAJ heat shock N-terminal domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:818142] identity=64.4; qcov=0.992; evalue=0; confidence=high
Rice	`Os10g0507800` (OsDjC73) - identity=59; qcov=1; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF00226 (DnaJ); PF11875 (DnaJ-like_C11_C); PF22774 (DNAJC11_beta-barrel)
InterPro	-
eggNOG	-
NR	GeneID:130992810

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057773541.1`
2	Mitochondrion membrane	线粒体膜	0.80000	`XP_057773541.1`
3	Peroxisome	过氧化物酶体	0.80000	`XP_057773541.1`
4	Mitochondrion outer membrane	线粒体外膜	0.60000	`XP_057773541.1`
5	Peroxisome membrane	过氧化物酶体膜	0.60000	`XP_057773541.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:46935312`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B14,C3,C70
`Chr7:46937253`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A20,B126
`Chr7:46937260`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B18
`Chr7:46937282`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:46940508`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:46942420`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C3,C70
`Chr7:46943737`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B111
`Chr7:46943747`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B10,B45,C19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773541.1

541 aa

270

541

DnaJ

DNAJC11_beta-barrel

DnaJ-like_C11_C

PF00226 DnaJ 13-77 aa PF22774 DNAJC11_beta-barrel 145-350 aa PF11875 DnaJ-like_C11_C 399-535 aa

XP_057773542.1

493 aa

246

493

DNAJC11_beta-barrel

DnaJ-like_C11_C

PF22774 DNAJC11_beta-barrel 97-302 aa PF11875 DnaJ-like_C11_C 351-487 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773541.1`	Pfam	`PF00226`	DnaJ	Domain	13	77	1.7e-20	73.6	DnaJ domain
`XP_057773541.1`	Pfam	`PF22774`	DNAJC11_beta-barrel	Domain	145	350	3.9e-26	92.7	DNAJC11, beta-barrel domain
`XP_057773541.1`	Pfam	`PF11875`	DnaJ-like_C11_C	Domain	399	535	1.7e-43	148.4	DnaJ-like protein C11, C-terminal
`XP_057773542.1`	Pfam	`PF22774`	DNAJC11_beta-barrel	Domain	97	302	3.1e-26	93.0	DNAJC11, beta-barrel domain
`XP_057773542.1`	Pfam	`PF11875`	DnaJ-like_C11_C	Domain	351	487	1.6e-43	148.5	DnaJ-like protein C11, C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057917558.1
GTTGAAAAGGGCAAGAACGAAAGTTACCCAACGCCCAAGAAAGGCAAAAGAAATGCGTCTTTTTTACAAGGAATCTTCGGCACCCCTCTTAATCAACAAATTTAACTTCCATAGTCTCTCTTCTTACTTGACTGTTTTTTTTTTGCCCTTTTTCTCCTAAAGCCCTTAAAACCCTTTTTCGCTCAATGACTGAAAAAAATGGTGAAACCAACAACAAACAGCTCTACGCTTTGCTTCACGTTTCGCCGGAAGCTTCCGAT...

XM_057917559.1
TTACCCAACGCCCAAGAAAGGCAAAAGAAATGCGTCTTTTTTACAAGGAATCTTCGGCACCCCTCTTAATCAACAAATTTAACTTCCATAGTCTCTCTTCTTACTTGACTGTTTTTTTTTTGCCCTTTTTCTCCTAAAGCCCTTAAAACCCTTTTTCGCTCAATGACTGAAAAAAATGGTGAAACCAACAACAAACAGCTCTACGCTTTGCTTCACGTTTCGCCGGAAGCTTCCGATGAAGAGATTAGAAGGGCGTATCG...

CDS

2 records

下载 CDS FASTA

LOC130992810
ATGACTGAAAAAAATGGTGAAACCAACAACAAACAGCTCTACGCTTTGCTTCACGTTTCGCCGGAAGCTTCCGATGAAGAGATTAGAAGGGCGTATCGCCAATGGGCCCAAGTTTATCATCCGGATAAGCACCAATCTCCTCAAATGAAGGAGATTGCAACAGAGAACTTTCAACGAGTATGTGAAGCTTATGAGATTTTAACAGATGAAAATAAAAGGATCATATATGATATCTATGGCATGGAGGGACTTATTTCTGG...

LOC130992810
ATGAAGGAGATTGCAACAGAGAACTTTCAACGAGTATGTGAAGCTTATGAGATTTTAACAGATGAAAATAAAAGGATCATATATGATATCTATGGCATGGAGGGACTTATTTCTGGCCTGGAGCTTGGCCCTAAACTTGAAAAAATCGATGAGATCAAGGAAGAACTTGAAAGATTGCGGCATCAGAGAGAACAAGAAAAAGCCACACCCAATATCCGATCATCTGGTTCACTTTTGGCAAATTTGTCATGGCCTGATCT...

Protein

2 records

下载 Protein FASTA

XP_057773541.1
MTEKNGETNNKQLYALLHVSPEASDEEIRRAYRQWAQVYHPDKHQSPQMKEIATENFQRVCEAYEILTDENKRIIYDIYGMEGLISGLELGPKLEKIDEIKEELERLRHQREQEKATPNIRSSGSLLANLSWPDLLDGDGFMRGMAMATEVQSQISKRTSLDIGGNLAVNENSGGGAATAILRHHVSQVSSVELMGSIGLQSLVGIQISRQLSVHCNASTGITASLRDGSLNLSNTWTRQLSETTNGNIQLSLGEESSIG...

XP_057773542.1
MKEIATENFQRVCEAYEILTDENKRIIYDIYGMEGLISGLELGPKLEKIDEIKEELERLRHQREQEKATPNIRSSGSLLANLSWPDLLDGDGFMRGMAMATEVQSQISKRTSLDIGGNLAVNENSGGGAATAILRHHVSQVSSVELMGSIGLQSLVGIQISRQLSVHCNASTGITASLRDGSLNLSNTWTRQLSETTNGNIQLSLGEESSIGIGWRKKEQKVSASGEIKIGTSSFGATANFTRFFSSKSHGRIAGTVGSD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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