当前解析结果
SmilChr07G003821| 统一新 Gene ID | SmilChr07G003821 |
|---|---|
| 名称 | SmilChr07G003821 |
| 描述 | uncharacterized SmilChr07G003821 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 47254065 - 47260169 / + |
| NCBI Gene ID | LOC130992819 |
|---|---|
| GeneID | 130992819 |
| locus_tag | - |
| NCBI Name | LOC130992819 |
| 原始查询 | LOC130992819 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os03g0249200; species=rice; confidence=high |
| 产物 | hit=Os03g0249200; species=rice; confidence=high |
| Arabidopsis | AT1G62850 (AT1G62850)Class I peptide chain release factor [Source:NCBI gene (formerly Entrezgene);Acc:842585] identity=52.8; qcov=0.739; evalue=6.41e-53; confidence=high |
| Rice | Os03g0249200- identity=51.4; qcov=0.761; evalue=2.06e-53; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992819 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057773552.1 |
| 2 | Mitochondrion matrix | 线粒体基质 | 1.00000 | XP_057773552.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057773552.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057773552.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057773552.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:47254287 |
C |
CTT |
2bp_insertion | frameshift_variant | 32 | A10,A11,A18,A22,B130,B131,B140,B19,B29,B35,B48,B59,B6,B65,B69,B74,B75,B78,B80,B82,B9,C1,C17,C21,C26,C45,C46,C61,C63,C76,D4,D8 |
Chr7:47254334 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B36,C26 |
Chr7:47254385 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A25,B108,B88,C37 |
Chr7:47254395 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr7:47258674 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C43,C87 |
Chr7:47259746 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B14,B82,C10,C39,C61 |
Chr7:47259766 |
CA |
C |
1bp_deletion | frameshift_variant | 30 | A14,A18,A8,B102,B105,B122,B131,B22,B3,B30,B31,B44,B45,B47,B66,B7,B81,B88,C12,C14,C17,C42,C47,C65,C76,C84,C86,C9,D4,D6 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。