Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003825`

染色体: Chr07 坐标: 47289504-47300301 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003825`
名称	SmilChr07G003825
描述	uncharacterized SmilChr07G003825
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	47289504 - 47300301 / `+`

ID 对照

NCBI Gene ID	`LOC130992823`
GeneID	`130992823`
locus_tag	`-`
NCBI Name	`LOC130992823`
原始查询	`LOC130992823`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Aldolase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837776]; symbol=AT1G12230; hit=AT1G12230; species=arabidopsis; confidence=high
产物	Aldolase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837776]; symbol=AT1G12230; hit=AT1G12230; species=arabidopsis; confidence=high
Arabidopsis	`AT1G12230` (AT1G12230) Aldolase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837776] identity=73.8; qcov=0.864; evalue=0; confidence=high
Rice	`Os08g0154300` (OJ1066_B03.121-1) - identity=66.4; qcov=0.967; evalue=1.41e-178; confidence=high
GO	GO:0004801 (transaldolase activity); GO:0005622 (intracellular anatomical structure); GO:0005737 (cytoplasm); GO:0005975 (carbohydrate metabolic process); GO:0006098 (pentose-phosphate shunt)
KEGG	smil00030 (Pentose phosphate pathway - Salvia miltiorrhiza (redroot sage)); smil00710 (Carbon fixation by Calvin cycle - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF00923 (TAL_FSA)
InterPro	-
eggNOG	-
NR	GeneID:130992823

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057773555.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057773555.1`
3	Nucleus	细胞核	0.00000	`XP_057773555.1`
4	Chromosome	染色体	0.00000	`XP_057773555.1`
5	Centromere	着丝粒	0.00000	`XP_057773555.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:47290023`	`G`	`GT`	1bp_insertion	frameshift_variant	2	C43,C87
`Chr7:47290023`	`G`	`GT`	1bp_insertion	CDS_variant	2	C43,C87
`Chr7:47292120`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B31
`Chr7:47297427`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A20,B126,B13,B87
`Chr7:47297567`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B123,C21,C34
`Chr7:47298069`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:47298091`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:47299995`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B67,C78
`Chr7:47300009`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B31

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773555.1

400 aa

200

400

TAL_FSA

PF00923 TAL_FSA 79-332 aa

XP_057773557.1

397 aa

198

397

TAL_FSA

PF00923 TAL_FSA 76-329 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773555.1`	Pfam	`PF00923`	TAL_FSA	Domain	79	332	9.3e-45	153.9	Transaldolase/Fructose-6-phosphate aldolase
`XP_057773557.1`	Pfam	`PF00923`	TAL_FSA	Domain	76	329	8.9e-45	153.9	Transaldolase/Fructose-6-phosphate aldolase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057917574.1
GGTCGTTGCAAGCAAATGAAAACCGAAAACTTACATTGGAAACGCAGTTTACCGGAGTCTTCCTTTTCTCTGACACGAGTTCGGCAGTCACTAATTTTGATTCTTCCATACATACAGACATTGATACACTTATCATCCATTATCAATTATGTCAGCTACTTTGCATTCTCCGCTATCCTCTACTCTCTCTCCAACTTCATCTCTTCAGGTGAAGAGACTGCAGATTCCACCTCGCTCCACGAATTCCGATGTCGTTTTCA...

XM_057917572.1
TACATTGGAAACGCAGTTTACCGGAGTCTTCCTTTTCTCTGACACGAGTTCGGCAGTCACTAATTTTGATTCTTCCATACATACAGACATTGATACACTTATCATCCATTATCAATTATGTCAGCTACTTTGCATTCTCCGCTATCCTCTACTCTCTCTCCAACTTCATCTCTTCAGGTGAAGAGACTGCAGATTCCACCTCGCTCCACGAATTCCGATGTCGTTTTCAAGCCTAAGCGGTTTTGCCTTTCGATTCGAGC...

CDS

2 records

下载 CDS FASTA

LOC130992823
ATGTCAGCTACTTTGCATTCTCCGCTATCCTCTACTCTCTCTCCAACTTCATCTCTTCAGGTGAAGAGACTGCAGATTCCACCTCGCTCCACGAATTCCGATGTCGTTTTCAAGCCTAAGCGGTTTTGCCTTTCGATTCGAGCTGCTACTAACTTCTCTTCGTCTCTTGACACCGTGGTGATAGGTTTGAGCACCGAATTGGATGCCGTCTCGAGTTACAGCGCGATTGTTCCAGATACGGTCGTTTTTGATGATTTCGA...

LOC130992823
ATGTCAGCTACTTTGCATTCTCCGCTATCCTCTACTCTCTCTCCAACTTCATCTCTTCAGGTGAAGAGACTGCAGATTCCACCTCGCTCCACGAATTCCGATGTCGTTTTCAAGCCTAAGCGGTTTTGCCTTTCGATTCGAGCTGCTACTAACTTCTCTTCGTCTCTTGACACCGGTTTGAGCACCGAATTGGATGCCGTCTCGAGTTACAGCGCGATTGTTCCAGATACGGTCGTTTTTGATGATTTCGAGAGGTTTCC...

Protein

2 records

下载 Protein FASTA

XP_057773555.1
MSATLHSPLSSTLSPTSSLQVKRLQIPPRSTNSDVVFKPKRFCLSIRAATNFSSSLDTVVIGLSTELDAVSSYSAIVPDTVVFDDFERFPPTAATVSSSLILGICSLPDTKFRSAVDTALADSECYGLEKSDDRLSCFFNKALVNVGGDLAKLVPGRVSTEVDARLAYDTQAIVQKVNDLLKLYNKIGVSPERLLFKIPSTWQGIEASRLLELEGIQTHMTFVYSFCQAAAAAQAGASVIQIFVGRLRDWARNHTGDSEV...

XP_057773557.1
MSATLHSPLSSTLSPTSSLQVKRLQIPPRSTNSDVVFKPKRFCLSIRAATNFSSSLDTGLSTELDAVSSYSAIVPDTVVFDDFERFPPTAATVSSSLILGICSLPDTKFRSAVDTALADSECYGLEKSDDRLSCFFNKALVNVGGDLAKLVPGRVSTEVDARLAYDTQAIVQKVNDLLKLYNKIGVSPERLLFKIPSTWQGIEASRLLELEGIQTHMTFVYSFCQAAAAAQAGASVIQIFVGRLRDWARNHTGDSEVEAA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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