当前解析结果
SmilChr07G003480| 统一新 Gene ID | SmilChr07G003480 |
|---|---|
| 名称 | SmilChr07G003480 |
| 描述 | protein CANDIDATE G-PROTEIN COUPLED RECEPTOR 7 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 39081857 - 39083676 / - |
| NCBI Gene ID | LOC130992882 |
|---|---|
| GeneID | 130992882 |
| locus_tag | - |
| NCBI Name | LOC130992882 |
| 原始查询 | LOC130992882 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein CANDIDATE G-PROTEIN COUPLED RECEPTOR 7 |
| 产物 | protein CANDIDATE G-PROTEIN COUPLED RECEPTOR 7 |
| Arabidopsis | AT5G42090 (AT5G42090)Lung seven transmembrane receptor family protein [Source:NCBI gene (formerly Entrezgene);Acc:834214] identity=78.3; qcov=0.957; evalue=0; confidence=high |
| Rice | Os06g0132100 (134P10.3)- identity=67.9; qcov=0.979; evalue=0; confidence=high |
| GO | GO:0005794 (Golgi apparatus); GO:0006810 (transport); GO:0016020 (membrane) |
| KEGG | - |
| Pfam | PF06814 (GOST_TM); PF21904 (CAND6-7_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992882 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057773623.1 |
| 2 | Trans-golgi network | Trans-golgi network | 0.80000 | XP_057773623.1 |
| 3 | Cytoplasmic vesicle | 细胞质囊泡 | 0.60000 | XP_057773623.1 |
| 4 | Secretory vesicle | Secretory vesicle | 0.20000 | XP_057773623.1 |
| 5 | Vacuole | 液泡 | 0.20000 | XP_057773623.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:39082525 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B5,B78,C85 |
Chr7:39082744 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B5,B78 |
Chr7:39082879 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A2,A24,B94,C80 |
Chr7:39082965 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr7:39083056 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B12,B55 |
Chr7:39083214 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B108 |
Chr7:39083214 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057773623.1PF21904
CAND6-7_N 25-154 aa
PF06814
GOST_TM 174-414 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773623.1 |
Pfam | PF21904 |
CAND6-7_N | Domain | 25 | 154 | 2.7e-35 | 122.2 | CAND6/7, N-terminal domain |
XP_057773623.1 |
Pfam | PF06814 |
GOST_TM | Domain | 174 | 414 | 5.8e-32 | 112.0 | GOST, seven transmembrane domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。